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BDBM50601468

E3L062393
Internal ID: BDB062393
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB062393/BDB062393.sdf
Basic Properties
Compound ID
E3L062393
Internal ID
BDB062393
Molecular formula
C34H34N4O5S
Molecular weight
610.736000
Exact mass
610.224991
XLogP
5.5734
TPSA
129.7200
HBA / HBD
7 / 3
Rotatable bonds
13
Heavy atoms / rings
44 / 4
Activity summary
IC50 unknown 6.80000000 nM
1 activity record(s) imported
InChIKey
BDYNTWOCTIWVBG-WUFINQPMSA-N
SMILES
CCOC(=O)[C@@H](Cc1ccccc1)NC(=O)[C@H](CC(C)C)NC(=O)C(=O)c1c(-c2ccccc2)[nH]c2ccc(N=C=S)cc12
Aliases
BDBM50601468 (preferred) ethyl (2R)-2-[[(2S)-2-[[2-(5-isothiocyanato-2-phenyl-1H-indol-3-yl)-2-oxoacetyl]amino]-4-methylpentanoyl]amino]-3-phenylpropanoate (source_name) BDBM50601468 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50601468 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50601468 Open - 10.7270/Q2SF316G PMID: 33764065
PubChem CID168275083 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCOC(=O)[C@@H](Cc1ccccc1)NC(=O)[C@H](CC(C)C)NC(=O)C(=O)c1c(-c2ccccc2)[nH]c2ccc(N=C=S)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB062393/BDB062393.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB062393/BDB062393.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB062393/BDB062393.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB062393/BDB062393.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB062393/BDB062393.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM50601468 IC50 6.8 nM Very high DOI: 10.7270/Q2SF316G
PMID: 33764065 		1