< Back to small molecule database

BDBM50602049

E3L062483
Internal ID: BDB062483
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB062483/BDB062483.sdf
Basic Properties
Compound ID
E3L062483
Internal ID
BDB062483
Molecular formula
C22H26N6O2
Molecular weight
406.490000
Exact mass
406.211724
XLogP
1.9265
TPSA
103.0100
HBA / HBD
6 / 3
Rotatable bonds
6
Heavy atoms / rings
30 / 4
Activity summary
IC50 unknown 0.36000000 nM
3 activity record(s) imported
InChIKey
HBJRTNJBCUCSST-QGZVFWFLSA-N
SMILES
CCc1cc2ncc(CN3CC[C@@H](Nc4ccc(C(=O)NC)nc4)C3)cc2[nH]c1=O
Aliases
BDBM50602049 (preferred) 5-[[(3R)-1-[(7-ethyl-6-oxo-5H-1,5-naphthyridin-3-yl)methyl]pyrrolidin-3-yl]amino]-N-methylpyridine-2-carboxamide (source_name) BDBM50602049 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50602049 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50602049 Open - 10.7270/Q2NC65Q2; 10.7270/Q2V41095 PMID: 36343904
PubChem CID168177312 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCc1cc2ncc(CN3CC[C@@H](Nc4ccc(C(=O)NC)nc4)C3)cc2[nH]c1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB062483/BDB062483.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB062483/BDB062483.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB062483/BDB062483.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB062483/BDB062483.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB062483/BDB062483.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50602049 IC50 0.49 nM Very high DOI: 10.7270/Q2V41095
PMID: 36343904 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50602049 IC50 0.36 nM Very high DOI: 10.7270/Q2NC65Q2 1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50602049 IC50 1.9 nM Very high DOI: 10.7270/Q2V41095
PMID: 36343904 		1