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BDBM50605320

E3L062700
Internal ID: BDB062700
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB062700/BDB062700.sdf
Basic Properties
Compound ID
E3L062700
Internal ID
BDB062700
Molecular formula
C29H31N5O3
Molecular weight
497.599000
Exact mass
497.242690
XLogP
3.9405
TPSA
85.3700
HBA / HBD
5 / 1
Rotatable bonds
7
Heavy atoms / rings
37 / 5
Activity summary
Ki unknown 0.03600000 nM
1 activity record(s) imported
InChIKey
ISDXSXRXQJIJGT-UHFFFAOYSA-N
SMILES
COc1cc(CN2CCc3c(cc(Cn4ccn(C)c4=N)cc3-c3cccnc3C)C2=O)cc(OC)c1
Aliases
BDBM50605320 (preferred) 2-[(3,5-Dimethoxyphenyl)methyl]-7-[(2-imino-3-methylimidazol-1-yl)methyl]-5-(2-methyl-3-pyridinyl)-3,4-dihydroisoquinolin-1-one (source_name) BDBM50605320 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50605320 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50605320 Open - 10.7270/Q2JQ153M PMID: 35436124
PubChem CID168293846 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(CN2CCc3c(cc(Cn4ccn(C)c4=N)cc3-c3cccnc3C)C2=O)cc(OC)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB062700/BDB062700.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB062700/BDB062700.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB062700/BDB062700.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB062700/BDB062700.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB062700/BDB062700.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50605320 Ki 0.036 nM Very high DOI: 10.7270/Q2JQ153M
PMID: 35436124 		1