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BDBM50606746

E3L062833
Internal ID: BDB062833
Activity data available Local docking-ready structure
Dock with Q9BVC4
Structure
/e3_file/ligand_db/generated/BDB062833/BDB062833.sdf
Basic Properties
Compound ID
E3L062833
Internal ID
BDB062833
Molecular formula
C29H31N7O
Molecular weight
493.615000
Exact mass
493.259009
XLogP
3.0531
TPSA
82.5400
HBA / HBD
6 / 0
Rotatable bonds
5
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 10.00000000 nM
1 activity record(s) imported
InChIKey
YKMDFLBFXDXLSC-UHFFFAOYSA-N
SMILES
Cn1c(C(=O)N2CCN(c3ccccc3)CC2)cc(CN2CCN(c3ccccc3C#N)CC2)c1C#N
Aliases
BDBM50606746 (preferred) 3-[[4-(2-Cyanophenyl)piperazin-1-yl]methyl]-1-methyl-5-(4-phenylpiperazine-1-carbonyl)pyrrole-2-carbonitrile (source_name) BDBM50606746 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BVC4 MLST8;GBL;LST8
Target of rapamycin complex subunit LST8		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50606746 medium
; target=Target of rapamycin complex subunit LST8
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50606746 Open - 10.7270/Q2ZG6XB2 PMID: 35688004
PubChem CID134515696 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(C(=O)N2CCN(c3ccccc3)CC2)cc(CN2CCN(c3ccccc3C#N)CC2)c1C#N keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB062833/BDB062833.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB062833/BDB062833.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB062833/BDB062833.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB062833/BDB062833.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB062833/BDB062833.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Target of rapamycin complex subunit LST8
Q9BVC4
E3 ligase component 		BindingDB:BDBM50606746 IC50 10 nM Very high DOI: 10.7270/Q2ZG6XB2
PMID: 35688004 		1