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BDBM50615324

E3L063239
Internal ID: BDB063239
Activity data available Local docking-ready structure
Dock with P35226
Structure
/e3_file/ligand_db/generated/BDB063239/BDB063239.sdf
Basic Properties
Compound ID
E3L063239
Internal ID
BDB063239
Molecular formula
C18H13F3N6
Molecular weight
370.338000
Exact mass
370.115379
XLogP
4.2813
TPSA
68.5200
HBA / HBD
5 / 1
Rotatable bonds
3
Heavy atoms / rings
27 / 4
Activity summary
IC50 unknown 1.00000000 nM
1 activity record(s) imported
InChIKey
GJDAXQVRLYNWDH-UHFFFAOYSA-N
SMILES
Cc1nc2ccccc2n1-c1cnnc(Nc2ccc(C(F)(F)F)cc2)n1
Aliases
BDBM50615324 (preferred) 5-(2-methylbenzimidazol-1-yl)-N-[4-(trifluoromethyl)phenyl]-1,2,4-triazin-3-amine (source_name) BDBM50615324 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P35226 BMI1;PCGF4;RNF51
Polycomb complex protein BMI-1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50615324 medium
; target=Polycomb complex protein BMI-1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50615324 Open - 10.7270/Q2JW8K4D PMID: 28851503
PubChem CID118095422 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc2ccccc2n1-c1cnnc(Nc2ccc(C(F)(F)F)cc2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063239/BDB063239.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063239/BDB063239.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063239/BDB063239.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063239/BDB063239.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063239/BDB063239.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb complex protein BMI-1
P35226
E3 ligase component 		BindingDB:BDBM50615324 IC50 1 nM Very high DOI: 10.7270/Q2JW8K4D
PMID: 28851503 		1