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BDBM50616753

E3L063394
Internal ID: BDB063394
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB063394/BDB063394.sdf
Basic Properties
Compound ID
E3L063394
Internal ID
BDB063394
Molecular formula
C19H20ClF2N3O3
Molecular weight
411.836000
Exact mass
411.116126
XLogP
2.7845
TPSA
79.3700
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
28 / 3
Activity summary
IC50 unknown 1350.00000000 nM
1 activity record(s) imported
InChIKey
IJGDDBZDJUBMTF-UHFFFAOYSA-N
SMILES
CC(F)(F)C(=O)NCCC1CCN(C2=C(Cl)C(=O)c3ncccc3C2=O)CC1
Aliases
BDBM50616753 (preferred) N-[2-[1-(7-chloro-5,8-dioxoquinolin-6-yl)piperidin-4-yl]ethyl]-2,2-difluoropropanamide (source_name) BDBM50616753 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50616753 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50616753 Open - 10.1021/acs.jmedchem.2c01920 PMID: 36642961
PubChem CID172450824 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(F)(F)C(=O)NCCC1CCN(C2=C(Cl)C(=O)c3ncccc3C2=O)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063394/BDB063394.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063394/BDB063394.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063394/BDB063394.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063394/BDB063394.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063394/BDB063394.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM50616753 IC50 1350 nM Low DOI: 10.1021/acs.jmedchem.2c01920
PMID: 36642961 		1