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BDBM50618050

E3L063405
Internal ID: BDB063405
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB063405/BDB063405.sdf
Basic Properties
Compound ID
E3L063405
Internal ID
BDB063405
Molecular formula
C29H26N10O2
Molecular weight
546.595000
Exact mass
546.224020
XLogP
4.4107
TPSA
159.7400
HBA / HBD
8 / 4
Rotatable bonds
7
Heavy atoms / rings
41 / 6
Activity summary
IC50 unknown 142.00000000 nM
1 activity record(s) imported
InChIKey
SJLSKGISTQLWPO-UHFFFAOYSA-N
SMILES
Cc1c2ccc(N(C)c3ccnc(Nc4ccc(C(=O)Nc5nc6c(C(N)=O)cccc6[nH]5)cc4)n3)cc2nn1C
Aliases
BDBM50618050 (preferred) 2-[[4-[[4-[(2,3-dimethylindazol-6-yl)-methylamino]pyrimidin-2-yl]amino]benzoyl]amino]-1H-benzimidazole-4-carboxamide (source_name) BDBM50618050 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50618050 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50618050 Open - 10.1021/acs.jmedchem.3c00640 PMID: 37616488
PubChem CID172458267 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c2ccc(N(C)c3ccnc(Nc4ccc(C(=O)Nc5nc6c(C(N)=O)cccc6[nH]5)cc4)n3)cc2nn1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063405/BDB063405.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063405/BDB063405.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063405/BDB063405.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063405/BDB063405.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063405/BDB063405.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50618050 IC50 142 nM Moderate DOI: 10.1021/acs.jmedchem.3c00640
PMID: 37616488 		1