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BDBM50618060

E3L063415
Internal ID: BDB063415
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB063415/BDB063415.sdf
Basic Properties
Compound ID
E3L063415
Internal ID
BDB063415
Molecular formula
C28H27N7O
Molecular weight
477.572000
Exact mass
477.227708
XLogP
5.7537
TPSA
112.8200
HBA / HBD
6 / 3
Rotatable bonds
7
Heavy atoms / rings
36 / 5
Activity summary
IC50 unknown 90.00000000 nM
1 activity record(s) imported
InChIKey
IILPHHOODKHQOG-UHFFFAOYSA-N
SMILES
CC(C)c1ccc(N(C)c2ccnc(Nc3ccc(-c4nc5c(C(N)=O)cccc5[nH]4)cc3)n2)cc1
Aliases
BDBM50618060 (preferred) 2-[4-[[4-(N-methyl-4-propan-2-ylanilino)pyrimidin-2-yl]amino]phenyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50618060 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50618060 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50618060 Open - 10.1021/acs.jmedchem.3c00640 PMID: 37616488
PubChem CID172465341 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)c1ccc(N(C)c2ccnc(Nc3ccc(-c4nc5c(C(N)=O)cccc5[nH]4)cc3)n2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063415/BDB063415.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063415/BDB063415.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063415/BDB063415.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063415/BDB063415.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063415/BDB063415.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50618060 IC50 90 nM High DOI: 10.1021/acs.jmedchem.3c00640
PMID: 37616488 		1