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BDBM50618065

E3L063420
Internal ID: BDB063420
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB063420/BDB063420.sdf
Basic Properties
Compound ID
E3L063420
Internal ID
BDB063420
Molecular formula
C27H29N9O
Molecular weight
495.591000
Exact mass
495.249507
XLogP
4.6613
TPSA
130.6400
HBA / HBD
7 / 3
Rotatable bonds
6
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 129.00000000 nM
1 activity record(s) imported
InChIKey
PQGNKFPVNFDEDY-UHFFFAOYSA-N
SMILES
CN(c1ccnc(Nc2ccc(-c3nc4c(C(N)=O)cccc4[nH]3)cc2)n1)c1cc(C(C)(C)C)n(C)n1
Aliases
BDBM50618065 (preferred) 2-[4-[[4-[(5-tert-butyl-1-methylpyrazol-3-yl)-methylamino]pyrimidin-2-yl]amino]phenyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50618065 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50618065 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50618065 Open - 10.1021/acs.jmedchem.3c00640 PMID: 37616488
PubChem CID172445853 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(c1ccnc(Nc2ccc(-c3nc4c(C(N)=O)cccc4[nH]3)cc2)n1)c1cc(C(C)(C)C)n(C)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063420/BDB063420.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063420/BDB063420.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063420/BDB063420.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063420/BDB063420.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063420/BDB063420.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50618065 IC50 129 nM Moderate DOI: 10.1021/acs.jmedchem.3c00640
PMID: 37616488 		1