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BDBM50618076

E3L063431
Internal ID: BDB063431
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB063431/BDB063431.sdf
Basic Properties
Compound ID
E3L063431
Internal ID
BDB063431
Molecular formula
C28H26N10O
Molecular weight
518.585000
Exact mass
518.229105
XLogP
4.5288
TPSA
143.5300
HBA / HBD
8 / 3
Rotatable bonds
6
Heavy atoms / rings
39 / 6
Activity summary
IC50 unknown 150.00000000 nM
1 activity record(s) imported
InChIKey
CSGHPSLYQBFKEY-UHFFFAOYSA-N
SMILES
Cc1cc(Nc2nccc(N(C)c3ccc4c(C)n(C)nc4c3)n2)cnc1-c1nc2c(C(N)=O)cccc2[nH]1
Aliases
BDBM50618076 (preferred) 2-[5-[[4-[(2,3-dimethylindazol-6-yl)-methylamino]pyrimidin-2-yl]amino]-3-methyl-2-pyridinyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50618076 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50618076 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50618076 Open - 10.1021/acs.jmedchem.3c00640 PMID: 37616488
PubChem CID172463175 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(Nc2nccc(N(C)c3ccc4c(C)n(C)nc4c3)n2)cnc1-c1nc2c(C(N)=O)cccc2[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063431/BDB063431.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063431/BDB063431.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063431/BDB063431.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063431/BDB063431.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063431/BDB063431.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50618076 IC50 150 nM Moderate DOI: 10.1021/acs.jmedchem.3c00640
PMID: 37616488 		1