< Back to small molecule database

BDBM50618093

E3L063448
Internal ID: BDB063448
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB063448/BDB063448.sdf
Basic Properties
Compound ID
E3L063448
Internal ID
BDB063448
Molecular formula
C28H24F2N8
Molecular weight
510.552000
Exact mass
510.209199
XLogP
6.3131
TPSA
87.5500
HBA / HBD
6 / 2
Rotatable bonds
5
Heavy atoms / rings
38 / 6
Activity summary
IC50 unknown 682.00000000 nM
1 activity record(s) imported
InChIKey
VSWDXFSNRCBKQK-UHFFFAOYSA-N
SMILES
Cc1ccc(Nc2nccc(N(C)c3ccc4c(C)n(C)nc4c3)n2)cc1-c1nc2cc(F)c(F)cc2[nH]1
Aliases
BDBM50618093 (preferred) 2-N-[3-(5,6-difluoro-1H-benzimidazol-2-yl)-4-methylphenyl]-4-N-(2,3-dimethylindazol-6-yl)-4-N-methylpyrimidine-2,4-diamine (source_name) BDBM50618093 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50618093 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50618093 Open - 10.1021/acs.jmedchem.3c00640 PMID: 37616488
PubChem CID172444193 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(Nc2nccc(N(C)c3ccc4c(C)n(C)nc4c3)n2)cc1-c1nc2cc(F)c(F)cc2[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063448/BDB063448.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063448/BDB063448.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063448/BDB063448.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063448/BDB063448.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063448/BDB063448.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50618093 IC50 682 nM Moderate DOI: 10.1021/acs.jmedchem.3c00640
PMID: 37616488 		1