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BDBM50618101

E3L063456
Internal ID: BDB063456
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB063456/BDB063456.sdf
Basic Properties
Compound ID
E3L063456
Internal ID
BDB063456
Molecular formula
C28H26N8O
Molecular weight
490.571000
Exact mass
490.222957
XLogP
5.7351
TPSA
96.7800
HBA / HBD
7 / 2
Rotatable bonds
6
Heavy atoms / rings
37 / 6
Activity summary
IC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
NCJJYVVWWSWNKW-UHFFFAOYSA-N
SMILES
COc1ccc(-c2nc3ccccc3[nH]2)cc1Nc1nccc(N(C)c2ccc3c(C)n(C)nc3c2)n1
Aliases
BDBM50618101 (preferred) 2-N-[5-(1H-benzimidazol-2-yl)-2-methoxyphenyl]-4-N-(2,3-dimethylindazol-6-yl)-4-N-methylpyrimidine-2,4-diamine (source_name) BDBM50618101 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50618101 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50618101 Open - 10.1021/acs.jmedchem.3c00640 PMID: 37616488
PubChem CID172462241 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc(-c2nc3ccccc3[nH]2)cc1Nc1nccc(N(C)c2ccc3c(C)n(C)nc3c2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063456/BDB063456.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063456/BDB063456.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063456/BDB063456.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063456/BDB063456.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063456/BDB063456.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50618101 IC50 >10000 nM Low DOI: 10.1021/acs.jmedchem.3c00640
PMID: 37616488 		1