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BDBM50624185

E3L063668

Internal ID: BDB063668

Activity data available Local docking-ready structure

Dock with O15151 Dock with Q00987

Structure

/e3_file/ligand_db/generated/BDB063668/BDB063668.sdf

Basic Properties

Compound ID

E3L063668

Internal ID

BDB063668

Molecular formula

C82H117N15O19

Molecular weight

1616.924000

Exact mass

1615.865017

XLogP

1.1038

TPSA

535.1700

HBA / HBD

18 / 19

Rotatable bonds

Heavy atoms / rings

116 / 6

Activity summary

Kd unknown 0.90000000 nM
4 activity record(s) imported

InChIKey

ALZYGOCWUAGMMY-BRNADKDGSA-N

SMILES

CC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@]1(C)CCCCCC/C=C\CCC[C@@](C)(C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(N)=O)NC(=O)[C@H](CC2CCC2)NC(=O)[C@H](C)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@H](CCC(=O)O)NC1=O)[C@@H](C)O

Aliases

BDBM50624185 (preferred) BDBM50624185 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
O15151	MDM4;MDMX Protein Mdm4	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50624185	medium ; target=Protein Mdm4
Q00987	MDM2 E3 ubiquitin-protein ligase Mdm2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50624185	medium ; target=E3 ubiquitin-protein ligase Mdm2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM50624185	Open	-	10.1021/acs.jmedchem.3c00623 PMID: 37439511

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Reference	CC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@]1(C)CCCCCC/C=C\CCC[C@@](C)(C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(N)=O)NC(=O)[C@H](CC2CCC2)NC(=O)[C@H](C)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@H](CCC(=O)O)NC1=O)[C@@H](C)O	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB063668/BDB063668.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB063668/BDB063668.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB063668/BDB063668.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB063668/BDB063668.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB063668/BDB063668.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
E3 ubiquitin-protein ligase Mdm2 Q00987 E3 ligase component	BindingDB:BDBM50624185	Kd	0.9 nM	Very high	DOI: 10.1021/acs.jmedchem.3c00623 PMID: 37439511	1
E3 ubiquitin-protein ligase Mdm2 Q00987 E3 ligase component	BindingDB:BDBM50624185	Ki	0.9 nM	Very high	DOI: 10.1021/acs.jmedchem.3c00623 PMID: 37439511	1
Protein Mdm4 O15151 E3 ligase component	BindingDB:BDBM50624185	Kd	7 nM	Very high	DOI: 10.1021/acs.jmedchem.3c00623 PMID: 37439511	1
Protein Mdm4 O15151 E3 ligase component	BindingDB:BDBM50624185	Ki	7 nM	Very high	DOI: 10.1021/acs.jmedchem.3c00623 PMID: 37439511	1