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BDBM50627381

E3L063836
Internal ID: BDB063836
Activity data available Local docking-ready structure
Dock with Q92630
Structure
/e3_file/ligand_db/generated/BDB063836/BDB063836.sdf
Basic Properties
Compound ID
E3L063836
Internal ID
BDB063836
Molecular formula
C19H23N3O2
Molecular weight
325.412000
Exact mass
325.179027
XLogP
2.7606
TPSA
62.7200
HBA / HBD
4 / 2
Rotatable bonds
2
Heavy atoms / rings
24 / 4
Activity summary
IC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
VOMDKRFMVUYOOQ-VBKFSLOCSA-N
SMILES
O=C1NC(NC2CCCCCC2)=N/C1=C\c1ccc2c(c1)CCO2
Aliases
BDBM50627381 (preferred) (5Z)-2-cycloheptylimino-5-(2,3-dihydro-1-benzofuran-5-ylmethylidene)imidazolidin-4-one (source_name) BDBM50627381 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q92630 DYRK2
Dual specificity tyrosine-phosphorylation-regulated kinase 2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50627381 medium
; target=Dual specificity tyrosine-phosphorylation-regulated kinase 2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50627381 Open - 10.1021/acs.jmedchem.3c00884 PMID: 37487467
PubChem CID172460680 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NC(NC2CCCCCC2)=N/C1=C\c1ccc2c(c1)CCO2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063836/BDB063836.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063836/BDB063836.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063836/BDB063836.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063836/BDB063836.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063836/BDB063836.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Dual specificity tyrosine-phosphorylation-regulated kinase 2
Q92630
E3 ligase component 		BindingDB:BDBM50627381 IC50 >10000 nM Low DOI: 10.1021/acs.jmedchem.3c00884
PMID: 37487467 		1