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BDBM50627485

E3L063940
Internal ID: BDB063940
Activity data available Local docking-ready structure
Dock with Q92630
Structure
/e3_file/ligand_db/generated/BDB063940/BDB063940.sdf
Basic Properties
Compound ID
E3L063940
Internal ID
BDB063940
Molecular formula
C20H20N4OS
Molecular weight
364.474000
Exact mass
364.135782
XLogP
3.2913
TPSA
66.3800
HBA / HBD
5 / 2
Rotatable bonds
2
Heavy atoms / rings
26 / 7
Activity summary
IC50 unknown 28.00000000 nM
1 activity record(s) imported
InChIKey
KHVQTEBOVFILCQ-SOFYXZRVSA-N
SMILES
O=C1NC(NC23CC4CC(CC2C4)C3)=N/C1=C\c1ccc2ncsc2c1
Aliases
BDBM50627485 (preferred) (5Z)-5-(1,3-benzothiazol-6-ylmethylidene)-2-(3-tricyclo[3.3.1.03,7]nonanylimino)imidazolidin-4-one (source_name) BDBM50627485 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q92630 DYRK2
Dual specificity tyrosine-phosphorylation-regulated kinase 2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50627485 medium
; target=Dual specificity tyrosine-phosphorylation-regulated kinase 2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50627485 Open - 10.1021/acs.jmedchem.3c00884 PMID: 37487467
PubChem CID168776270 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NC(NC23CC4CC(CC2C4)C3)=N/C1=C\c1ccc2ncsc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB063940/BDB063940.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB063940/BDB063940.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB063940/BDB063940.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB063940/BDB063940.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB063940/BDB063940.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Dual specificity tyrosine-phosphorylation-regulated kinase 2
Q92630
E3 ligase component 		BindingDB:BDBM50627485 IC50 28 nM High DOI: 10.1021/acs.jmedchem.3c00884
PMID: 37487467 		1