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BDBM50628423

E3L064096
Internal ID: BDB064096
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB064096/BDB064096.sdf
Basic Properties
Compound ID
E3L064096
Internal ID
BDB064096
Molecular formula
C25H21FN8O2
Molecular weight
484.495000
Exact mass
484.177150
XLogP
2.3010
TPSA
114.5900
HBA / HBD
6 / 1
Rotatable bonds
4
Heavy atoms / rings
36 / 6
Activity summary
IC50 unknown 6.30000000 nM
1 activity record(s) imported
InChIKey
QEFAGVNFWRMPRZ-UHFFFAOYSA-N
SMILES
Cn1ccc(-c2nnc3n2CCN(C(=O)c2cc(Cc4n[nH]c(=O)c5ccccc45)ccc2F)C3)n1
Aliases
BDBM50628423 (preferred) 4-[[4-fluoro-3-[3-(1-methylpyrazol-3-yl)-6,8-dihydro-5H-[1,2,4]triazolo[4,3-a]pyrazine-7-carbonyl]phenyl]methyl]-2H-phthalazin-1-one (source_name) BDBM50628423 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50628423 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50628423 Open - 10.1021/acs.jmedchem.3c00821 PMID: 37605459
PubChem CID129261897 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1ccc(-c2nnc3n2CCN(C(=O)c2cc(Cc4n[nH]c(=O)c5ccccc45)ccc2F)C3)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064096/BDB064096.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064096/BDB064096.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064096/BDB064096.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064096/BDB064096.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064096/BDB064096.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50628423 IC50 6.3 nM Very high DOI: 10.1021/acs.jmedchem.3c00821
PMID: 37605459 		1