< Back to small molecule database

BDBM50628439

E3L064112
Internal ID: BDB064112
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB064112/BDB064112.sdf
Basic Properties
Compound ID
E3L064112
Internal ID
BDB064112
Molecular formula
C29H26FN7O3
Molecular weight
539.571000
Exact mass
539.208116
XLogP
3.3662
TPSA
113.1500
HBA / HBD
7 / 1
Rotatable bonds
6
Heavy atoms / rings
40 / 7
Activity summary
IC50 unknown 0.96000000 nM
1 activity record(s) imported
InChIKey
UDYQXFSHQVQHQK-UHFFFAOYSA-N
SMILES
O=C(c1cc(Cc2n[nH]c(=O)c3ccccc23)ccc1F)N1CCn2c(nnc2-c2ccc(CN3CCC3)o2)C1
Aliases
BDBM50628439 (preferred) 4-[[3-[3-[5-(azetidin-1-ylmethyl)furan-2-yl]-6,8-dihydro-5H-[1,2,4]triazolo[4,3-a]pyrazine-7-carbonyl]-4-fluorophenyl]methyl]-2H-phthalazin-1-one (source_name) BDBM50628439 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50628439 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50628439 Open - 10.1021/acs.jmedchem.3c00821 PMID: 37605459
PubChem CID172452124 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(c1cc(Cc2n[nH]c(=O)c3ccccc23)ccc1F)N1CCn2c(nnc2-c2ccc(CN3CCC3)o2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064112/BDB064112.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064112/BDB064112.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064112/BDB064112.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064112/BDB064112.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064112/BDB064112.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50628439 IC50 0.96 nM Very high DOI: 10.1021/acs.jmedchem.3c00821
PMID: 37605459 		1