< Back to small molecule database

BDBM50630239

E3L064209
Internal ID: BDB064209
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB064209/BDB064209.sdf
Basic Properties
Compound ID
E3L064209
Internal ID
BDB064209
Molecular formula
C20H17FN4O4
Molecular weight
396.378000
Exact mass
396.123383
XLogP
0.4492
TPSA
104.2700
HBA / HBD
4 / 2
Rotatable bonds
3
Heavy atoms / rings
29 / 4
Activity summary
IC50 unknown 4.30000000 nM
1 activity record(s) imported
InChIKey
CEUSZBDWOAZEBV-UHFFFAOYSA-N
SMILES
O=C1CN(C(=O)c2cc(Cn3c(=O)[nH]c(=O)c4ccccc43)ccc2F)CCN1
Aliases
BDBM50630239 (preferred) 1-[[4-Fluoro-3-(3-oxopiperazine-1-carbonyl)phenyl]methyl]quinazoline-2,4-dione (source_name) BDBM50630239 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50630239 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50630239 Open - 10.1021/acs.jmedchem.3c01152 PMID: 37843892
PubChem CID172468108 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CN(C(=O)c2cc(Cn3c(=O)[nH]c(=O)c4ccccc43)ccc2F)CCN1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064209/BDB064209.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064209/BDB064209.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064209/BDB064209.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064209/BDB064209.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064209/BDB064209.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50630239 IC50 4.3 nM Very high DOI: 10.1021/acs.jmedchem.3c01152
PMID: 37843892 		1