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BDBM50630248

E3L064218
Internal ID: BDB064218
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB064218/BDB064218.sdf
Basic Properties
Compound ID
E3L064218
Internal ID
BDB064218
Molecular formula
C25H27FN4O4
Molecular weight
466.513000
Exact mass
466.201634
XLogP
2.3518
TPSA
95.4800
HBA / HBD
4 / 1
Rotatable bonds
7
Heavy atoms / rings
34 / 4
Activity summary
IC50 unknown 2.70000000 nM
1 activity record(s) imported
InChIKey
DLDYOMRJCIUSIG-UHFFFAOYSA-N
SMILES
CCCCCN1CCN(C(=O)c2cc(Cn3c(=O)[nH]c(=O)c4ccccc43)ccc2F)CC1=O
Aliases
BDBM50630248 (preferred) 1-[[4-Fluoro-3-(3-oxo-4-pentylpiperazine-1-carbonyl)phenyl]methyl]quinazoline-2,4-dione (source_name) BDBM50630248 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50630248 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50630248 Open - 10.1021/acs.jmedchem.3c01152 PMID: 37843892
PubChem CID172469120 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCCCN1CCN(C(=O)c2cc(Cn3c(=O)[nH]c(=O)c4ccccc43)ccc2F)CC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064218/BDB064218.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064218/BDB064218.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064218/BDB064218.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064218/BDB064218.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064218/BDB064218.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50630248 IC50 2.7 nM Very high DOI: 10.1021/acs.jmedchem.3c01152
PMID: 37843892 		1