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BDBM50631450

E3L064309

Internal ID: BDB064309

Activity data available Local docking-ready structure

Dock with O15151 Dock with Q00987

Structure

/e3_file/ligand_db/generated/BDB064309/BDB064309.sdf

Basic Properties

Compound ID

E3L064309

Internal ID

BDB064309

Molecular formula

C32H37ClFN3O5

Molecular weight

598.115000

Exact mass

597.240577

XLogP

5.5901

TPSA

122.9100

HBA / HBD

6 / 4

Rotatable bonds

Heavy atoms / rings

42 / 4

Activity summary

Ki unknown 47.00000000 nM
2 activity record(s) imported

InChIKey

NBYBNLXKIUYRBI-PJGOFDOSSA-N

SMILES

COc1cccc([C@H]2[C@H](C(=O)Nc3ccc(C(=O)O)cc3OC)N[C@@H](CC(C)(C)C)[C@]2(CN)c2ccc(Cl)cc2F)c1

Aliases

BDBM50631450 (preferred) 4-[[(2R,3R,4S,5S)-4-(aminomethyl)-4-(4-chloro-2-fluorophenyl)-5-(2,2-dimethylpropyl)-3-(3-methoxyphenyl)pyrrolidine-2-carbonyl]amino]-3-methoxybenzoic acid (source_name) BDBM50631450 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
O15151	MDM4;MDMX Protein Mdm4	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50631450	medium ; target=Protein Mdm4
Q00987	MDM2 E3 ubiquitin-protein ligase Mdm2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50631450	medium ; target=E3 ubiquitin-protein ligase Mdm2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM50631450	Open	-	10.1021/acs.jmedchem.3c01815 PMID: 38062557
PubChem	CID172459682	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	COc1cccc([C@H]2[C@H](C(=O)Nc3ccc(C(=O)O)cc3OC)N[C@@H](CC(C)(C)C)[C@]2(CN)c2ccc(Cl)cc2F)c1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB064309/BDB064309.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB064309/BDB064309.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB064309/BDB064309.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB064309/BDB064309.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB064309/BDB064309.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
E3 ubiquitin-protein ligase Mdm2 Q00987 E3 ligase component	BindingDB:BDBM50631450	Ki	47 nM	High	DOI: 10.1021/acs.jmedchem.3c01815 PMID: 38062557	1
Protein Mdm4 O15151 E3 ligase component	BindingDB:BDBM50631450	Ki	27619 nM	Low	DOI: 10.1021/acs.jmedchem.3c01815 PMID: 38062557	1