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BDBM50631536

E3L064362
Internal ID: BDB064362
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB064362/BDB064362.sdf
Basic Properties
Compound ID
E3L064362
Internal ID
BDB064362
Molecular formula
C30H30FN5O4
Molecular weight
543.599000
Exact mass
543.228183
XLogP
4.0806
TPSA
101.5800
HBA / HBD
5 / 2
Rotatable bonds
7
Heavy atoms / rings
40 / 5
Activity summary
Ki unknown 0.10000000 nM
1 activity record(s) imported
InChIKey
LYDQZWAZFFPXAQ-UHFFFAOYSA-N
SMILES
COc1cc(CN2CC(=O)Nc3c(cc(Cn4ccn(C)c4=N)cc3-c3ccc(F)cc3C)C2=O)cc(OC)c1
Aliases
BDBM50631536 (preferred) 4-[(3,5-Dimethoxyphenyl)methyl]-9-(4-fluoro-2-methylphenyl)-7-[(2-imino-3-methylimidazol-1-yl)methyl]-1,3-dihydro-1,4-benzodiazepine-2,5-dione (source_name) BDBM50631536 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50631536 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50631536 Open - 10.1021/acs.jmedchem.3c01529 PMID: 38085679
PubChem CID155382168 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(CN2CC(=O)Nc3c(cc(Cn4ccn(C)c4=N)cc3-c3ccc(F)cc3C)C2=O)cc(OC)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064362/BDB064362.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064362/BDB064362.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064362/BDB064362.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064362/BDB064362.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064362/BDB064362.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50631536 Ki 0.1 nM Very high DOI: 10.1021/acs.jmedchem.3c01529
PMID: 38085679 		1