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Ac-Gly(tBu)-Hyp-D-Phe(4-Me)-NH2

E3L064577
Internal ID: BDB064577
Activity data available Local docking-ready structure
Dock with P40337
Structure
/e3_file/ligand_db/generated/BDB064577/BDB064577.sdf
Basic Properties
Compound ID
E3L064577
Internal ID
BDB064577
Molecular formula
C23H34N4O5
Molecular weight
446.548000
Exact mass
446.252920
XLogP
0.0202
TPSA
141.8300
HBA / HBD
5 / 4
Rotatable bonds
7
Heavy atoms / rings
32 / 2
Activity summary
Kd > 51800.00000000 nM
2 activity record(s) imported
InChIKey
UFKVCVDZGONYDY-AKHDSKFASA-N
SMILES
CC(=O)N[C@H](C(=O)N1C[C@H](O)C[C@H]1C(=O)N[C@H](Cc1ccc(C)cc1)C(N)=O)C(C)(C)C
Aliases
BDBM50636928 (preferred) Ac-Gly(tBu)-Hyp-D-Phe(4-Me)-NH2 (source_name) BDBM50636928 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50636928 medium
; target=von Hippel-Lindau disease tumor suppressor
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50636928 Open - 10.7270/Q23B64QB PMID: 38809766
PubChem CID177374997 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)N[C@H](C(=O)N1C[C@H](O)C[C@H]1C(=O)N[C@H](Cc1ccc(C)cc1)C(N)=O)C(C)(C)C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064577/BDB064577.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064577/BDB064577.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064577/BDB064577.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064577/BDB064577.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064577/BDB064577.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM50636928 Kd >51800 nM Low DOI: 10.7270/Q23B64QB
PMID: 38809766 		1
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM50636928 Kd >57500 nM Low DOI: 10.7270/Q23B64QB
PMID: 38809766 		1