< Back to small molecule database

4-[2-(6-amino-8-oxo-7H-purin-9-yl)ethoxy]benzonitrile

E3L064717
Internal ID: BDB064717
Activity data available Local docking-ready structure
Dock with O96028 Dock with Q9BZ95
Structure
/e3_file/ligand_db/generated/BDB064717/BDB064717.sdf
Basic Properties
Compound ID
E3L064717
Internal ID
BDB064717
Molecular formula
C14H12N6O2
Molecular weight
296.290000
Exact mass
296.102174
XLogP
1.0648
TPSA
122.8700
HBA / HBD
7 / 2
Rotatable bonds
4
Heavy atoms / rings
22 / 3
Activity summary
IC50 unknown 2560.00000000 nM
2 activity record(s) imported
InChIKey
GMPZSQLBUVZIEX-UHFFFAOYSA-N
SMILES
N#Cc1ccc(OCCn2c(O)nc3c(N)ncnc32)cc1
Aliases
BDBM50637611 (preferred) 4-[2-(6-amino-8-oxo-7H-purin-9-yl)ethoxy]benzonitrile (source_name) BDBM50637611 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50637611 medium
; target=Histone-lysine N-methyltransferase NSD2
Q9BZ95 NSD3;WHSC1L1;DC28
Histone-lysine N-methyltransferase NSD3		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50637611 medium
; target=Histone-lysine N-methyltransferase NSD3
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50637611 Open - 10.7270/Q2377FBG PMID: 38412693
PubChem CID170551578 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1ccc(OCCn2c(O)nc3c(N)ncnc32)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064717/BDB064717.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064717/BDB064717.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064717/BDB064717.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064717/BDB064717.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064717/BDB064717.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM50637611 IC50 2800 nM Low DOI: 10.7270/Q2377FBG
PMID: 38412693 		1
Histone-lysine N-methyltransferase NSD3
Q9BZ95
E3 ligase component 		BindingDB:BDBM50637611 IC50 2560 nM Low DOI: 10.7270/Q2377FBG
PMID: 38412693 		1