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BDBM50639646

E3L064827
Internal ID: BDB064827
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB064827/BDB064827.sdf
Basic Properties
Compound ID
E3L064827
Internal ID
BDB064827
Molecular formula
C16H18N2O6
Molecular weight
334.328000
Exact mass
334.116486
XLogP
1.0122
TPSA
95.4500
HBA / HBD
7 / 1
Rotatable bonds
4
Heavy atoms / rings
24 / 3
Activity summary
Ki unknown 19300.00000000 nM
1 activity record(s) imported
InChIKey
RKTBPSUWUCWUFM-UHFFFAOYSA-N
SMILES
COc1ccc(C2=NOC3(CCC(=O)NC3=O)C2)c(OC)c1OC
Aliases
BDBM50639646 (preferred) 3-(2,3,4-Trimethoxyphenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione (source_name) BDBM50639646 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50639646 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50639646 Open - 10.7270/Q2PC3713 PMID: 38552426
PubChem CID177376706 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc(C2=NOC3(CCC(=O)NC3=O)C2)c(OC)c1OC keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064827/BDB064827.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064827/BDB064827.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064827/BDB064827.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064827/BDB064827.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064827/BDB064827.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM50639646 Ki 19300 nM Low DOI: 10.7270/Q2PC3713
PMID: 38552426 		1