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BDBM50639724

E3L064841
Internal ID: BDB064841
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB064841/BDB064841.sdf
Basic Properties
Compound ID
E3L064841
Internal ID
BDB064841
Molecular formula
C24H21N5O4
Molecular weight
443.463000
Exact mass
443.159354
XLogP
2.5200
TPSA
125.5300
HBA / HBD
5 / 2
Rotatable bonds
4
Heavy atoms / rings
33 / 5
Activity summary
IC50 unknown 54.00000000 nM
1 activity record(s) imported
InChIKey
KWOPWRFTBIKYGA-UHFFFAOYSA-N
SMILES
NC(=O)c1cccc2[nH]c(-c3ccc(C(=O)N4CCN(C(=O)c5ccco5)CC4)cc3)nc12
Aliases
BDBM50639724 (preferred) 2-[4-[4-(furan-2-carbonyl)piperazine-1-carbonyl]phenyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50639724 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50639724 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50639724 Open - 10.7270/Q21N85RF PMID: 38678823
PubChem CID164900115 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1cccc2[nH]c(-c3ccc(C(=O)N4CCN(C(=O)c5ccco5)CC4)cc3)nc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064841/BDB064841.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064841/BDB064841.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064841/BDB064841.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064841/BDB064841.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064841/BDB064841.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50639724 IC50 54 nM High DOI: 10.7270/Q21N85RF
PMID: 38678823 		1