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BDBM50639727

E3L064844
Internal ID: BDB064844
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB064844/BDB064844.sdf
Basic Properties
Compound ID
E3L064844
Internal ID
BDB064844
Molecular formula
C26H24FN5O4
Molecular weight
489.507000
Exact mass
489.181232
XLogP
3.3560
TPSA
125.5300
HBA / HBD
5 / 2
Rotatable bonds
4
Heavy atoms / rings
36 / 5
Activity summary
IC50 unknown 5.20000000 nM
1 activity record(s) imported
InChIKey
YGMNJMCOSLZKRR-UHFFFAOYSA-N
SMILES
Cc1ccoc1C(=O)N1CCN(C(=O)c2ccc(-c3nc4c(C(N)=O)cccc4[nH]3)cc2F)CC1C
Aliases
BDBM50639727 (preferred) 2-[3-fluoro-4-[3-methyl-4-(3-methylfuran-2-carbonyl)piperazine-1-carbonyl]phenyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50639727 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50639727 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50639727 Open - 10.7270/Q21N85RF PMID: 38678823
PubChem CID177376742 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccoc1C(=O)N1CCN(C(=O)c2ccc(-c3nc4c(C(N)=O)cccc4[nH]3)cc2F)CC1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064844/BDB064844.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064844/BDB064844.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064844/BDB064844.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064844/BDB064844.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064844/BDB064844.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50639727 IC50 5.2 nM Very high DOI: 10.7270/Q21N85RF
PMID: 38678823 		1