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BDBM50639846

E3L064858
Internal ID: BDB064858
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB064858/BDB064858.sdf
Basic Properties
Compound ID
E3L064858
Internal ID
BDB064858
Molecular formula
C47H53F3N8O6
Molecular weight
882.985000
Exact mass
882.404016
XLogP
7.1976
TPSA
178.8600
HBA / HBD
10 / 4
Rotatable bonds
10
Heavy atoms / rings
64 / 9
Activity summary
IC50 unknown 5.00000000 nM
2 activity record(s) imported
InChIKey
PRYXVIJFTJCBPJ-HBKAHHPBSA-N
SMILES
CN(C[C@H]1CC[C@H](n2cc3cc(NC(=O)c4cccc(C(F)(F)F)n4)c(C(C)(C)O)cc3n2)CC1)[C@H]1CCC2(CC1)C[C@H](Nc1cccc3c1C(=O)N(C1CCC(=O)NC1=O)C3=O)C2
Aliases
BDBM50639846 (preferred) BDBM50639846 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50639846 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50639846 Open - 10.7270/Q23F4V8G PMID: 38920289
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C[C@H]1CC[C@H](n2cc3cc(NC(=O)c4cccc(C(F)(F)F)n4)c(C(C)(C)O)cc3n2)CC1)[C@H]1CCC2(CC1)C[C@H](Nc1cccc3c1C(=O)N(C1CCC(=O)NC1=O)C3=O)C2 keep_bindingdb_stereo_or_protonation_variant
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064858/BDB064858.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064858/BDB064858.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064858/BDB064858.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064858/BDB064858.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064858/BDB064858.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM50639846 IC50 5 nM Very high DOI: 10.7270/Q23F4V8G
PMID: 38920289 		1
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM50639846 IC50 8 nM Very high DOI: 10.7270/Q23F4V8G
PMID: 38920289 		1