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BDBM50640350

E3L064861
Internal ID: BDB064861
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB064861/BDB064861.sdf
Basic Properties
Compound ID
E3L064861
Internal ID
BDB064861
Molecular formula
C29H38BFN4O5
Molecular weight
552.456000
Exact mass
552.291929
XLogP
3.0280
TPSA
122.4100
HBA / HBD
6 / 3
Rotatable bonds
9
Heavy atoms / rings
40 / 6
Activity summary
IC50 > 1000.00000000 nM
1 activity record(s) imported
InChIKey
OLNVDHYNIITNFG-SXCOYPSKSA-N
SMILES
CC(C)C[C@H](NC(=O)CNC(=O)c1cc(Cc2ccc(=O)[nH]n2)ccc1F)B1O[C@@H]2C[C@@H]3C[C@@H](C3(C)C)[C@]2(C)O1
Aliases
BDBM50640350 (preferred) BDBM50640350 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50640350 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50640350 Open - 10.7270/Q2ZK5N8H PMID: 38039793
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)C[C@H](NC(=O)CNC(=O)c1cc(Cc2ccc(=O)[nH]n2)ccc1F)B1O[C@@H]2C[C@@H]3C[C@@H](C3(C)C)[C@]2(C)O1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB064861/BDB064861.sdf Generated from canonical SMILES; MOL2/PDBQT repaired by Open Babel fallback
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB064861/BDB064861.mol2 Generated from canonical SMILES; repaired after batch conversion failure
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB064861/BDB064861.pdbqt Generated from canonical SMILES; repaired after batch conversion failure
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB064861/BDB064861.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB064861/BDB064861.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50640350 IC50 >1000 nM Moderate DOI: 10.7270/Q2ZK5N8H
PMID: 38039793 		1