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BDBM50645131

E3L065013
Internal ID: BDB065013
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB065013/BDB065013.sdf
Basic Properties
Compound ID
E3L065013
Internal ID
BDB065013
Molecular formula
C26H25N5O4
Molecular weight
471.517000
Exact mass
471.190654
XLogP
3.2169
TPSA
125.5300
HBA / HBD
5 / 2
Rotatable bonds
4
Heavy atoms / rings
35 / 5
Activity summary
IC50 unknown 16.00000000 nM
1 activity record(s) imported
InChIKey
ZQMGSEVLUHJWLL-UHFFFAOYSA-N
SMILES
Cc1ccoc1C(=O)N1CCN(C(=O)c2ccc(-c3nc4c(C(N)=O)cccc4[nH]3)cc2)C(C)C1
Aliases
BDBM50645131 (preferred) 2-[4-[2-methyl-4-(3-methylfuran-2-carbonyl)piperazine-1-carbonyl]phenyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50645131 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50645131 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50645131 Open - 10.7270/Q2QC086X PMID: 38838546
PubChem CID177377074 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccoc1C(=O)N1CCN(C(=O)c2ccc(-c3nc4c(C(N)=O)cccc4[nH]3)cc2)C(C)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB065013/BDB065013.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB065013/BDB065013.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB065013/BDB065013.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB065013/BDB065013.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB065013/BDB065013.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50645131 IC50 16 nM High DOI: 10.7270/Q2QC086X
PMID: 38838546 		1