< Back to small molecule database

9e

E3L066200
Internal ID: LIG000770
MGD Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/LIG000770/LIG000770.sdf
Basic Properties
Compound ID
E3L066200
Internal ID
LIG000770
Molecular formula
C22H21ClN4O4
Molecular weight
440.887000
Exact mass
440.125133
XLogP
2.7311
TPSA
107.6100
HBA / HBD
4 / 3
Rotatable bonds
4
Heavy atoms / rings
31 / 4
Activity summary
IC50 unknown 468.00000000 nM
1 activity record(s) imported
InChIKey
JZFGEKDBVDHOTP-UHFFFAOYSA-N
SMILES
Cc1ccc(NC(=O)NCc2ccc3c(c2)C(=O)N(C2CCC(=O)NC2=O)C3)cc1Cl
Aliases
9e (preferred) BDBM576138 (source_id) MolGlueDB:351 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM576138 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
MolGlueDB MGDB351 Open -
BindingDB BDBM576138 Open - 10.7270/Q25M68X2
Deduplication Evidence
Related source Related name Relationship Decision Tanimoto Note
BindingDB:BDBM576138 BDBM576138 exact_full_inchikey no_new_bindingdb_compound_link_evidence_to_base 1.000000
chiral 1.000000
Exact structure already exists in E3/MolGlue base library
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(NC(=O)NCc2ccc3c(c2)C(=O)N(C2CCC(=O)NC2=O)C3)cc1Cl keep_base
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/LIG000770/LIG000770.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/LIG000770/LIG000770.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/LIG000770/LIG000770.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/LIG000770/LIG000770.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/LIG000770/LIG000770.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM576138 IC50 468 nM Moderate DOI: 10.7270/Q25M68X2 1