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EM12-FS

E3L066795
Internal ID: LIG001365
MGD Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/LIG001365/LIG001365.sdf
Basic Properties
Compound ID
E3L066795
Internal ID
LIG001365
Molecular formula
C13H11FN2O6S
Molecular weight
342.304000
Exact mass
342.032185
XLogP
0.0407
TPSA
109.8500
HBA / HBD
6 / 1
Rotatable bonds
3
Heavy atoms / rings
23 / 3
Activity summary
IC50 unknown 255.00000000 nM
2 activity record(s) imported
InChIKey
RXYXBYLQECASPH-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3ccc(OS(=O)(=O)F)cc3C2=O)C(=O)N1
Aliases
EM12-FS (preferred) BDBM50630768 (source_id) MolGlueDB:1244 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50630768 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
MolGlueDB MGDB1244 Open -
BindingDB BDBM50630768 Open - 10.1021/acsmedchemlett.3c00371; 10.7270/Q2VM4HVH PMID: 37974938; 38711345
Deduplication Evidence
Related source Related name Relationship Decision Tanimoto Note
BindingDB:BDBM50630768 BDBM50630768 exact_full_inchikey no_new_bindingdb_compound_link_evidence_to_base 1.000000
chiral 1.000000 		Exact structure already exists in E3/MolGlue base library
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3ccc(OS(=O)(=O)F)cc3C2=O)C(=O)N1 keep_base
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/LIG001365/LIG001365.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/LIG001365/LIG001365.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/LIG001365/LIG001365.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/LIG001365/LIG001365.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/LIG001365/LIG001365.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM50630768 IC50 255 nM Moderate DOI: 10.1021/acsmedchemlett.3c00371
PMID: 37974938 		1
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM50630768 IC50 256 nM Moderate DOI: 10.7270/Q2VM4HVH
PMID: 38711345 		1