E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L021381
BDB021381
US11091495, Example 227
CN1CCOCC1c1ccc(-c2cnc(NCc3c(F)ccc4c3CCO4)n3cc(C#N)nc23)cc1
C27H25FN6O2
484.535000
GHGXGLCWQKLORM-UHFFFAOYSA-N O75530, Q09028 Histone-lysine N-methyltransferase EZH2, Polycomb protein EED
BindingDB, PubChem
BindingDB:BDBM513865; PubChem:CID155788115
Local ready
Direct docking supported
E3L021382
BDB021382
BDBM513867
CN1CCN(C(=O)c2cc(-c3cnc(NCc4c(F)ccc5c4CCO5)n4cc(C#N)nc34)n(C)n2)CC1
C26H26FN9O2
515.553000
JTCGIKFKCGLAPJ-UHFFFAOYSA-N O75530, Q09028 Histone-lysine N-methyltransferase EZH2, Polycomb protein EED
BindingDB, PubChem
BindingDB:BDBM513867; PubChem:CID155676915
Local ready
Direct docking supported
E3L021383
BDB021383
BDBM513868
CN(C)CCn1nccc1-c1cnc(NCc2c(F)ccc3c2CCO3)n2cc(C#N)nc12
C23H23FN8O
446.490000
PYPNAVIDPGTVCP-UHFFFAOYSA-N O75530, Q09028 Histone-lysine N-methyltransferase EZH2, Polycomb protein EED
BindingDB, PubChem
BindingDB:BDBM513868; PubChem:CID139371722
Local ready
Direct docking supported
E3L021384
BDB021384
BDBM513869
N#Cc1cn2c(NCc3c(F)ccc4c3CCO4)ncc(-c3ccnn3CCO)c2n1
C21H18FN7O2
419.420000
FEBQMVADONDCSH-UHFFFAOYSA-N O75530, Q09028 Histone-lysine N-methyltransferase EZH2, Polycomb protein EED
BindingDB, PubChem
BindingDB:BDBM513869; PubChem:CID139371093
Local ready
Direct docking supported
E3L021385
BDB021385
BDBM513870
N#Cc1cn2c(NCc3c(F)ccc4c3CCO4)ncc(-c3n[nH]cc3Br)c2n1
C19H13BrFN7O
454.263000
QJOCJQZOHIWCTD-UHFFFAOYSA-N O75530, Q09028 Histone-lysine N-methyltransferase EZH2, Polycomb protein EED
BindingDB, PubChem
BindingDB:BDBM513870; PubChem:CID139371710
Local ready
Direct docking supported
E3L021386
BDB021386
BDBM513871
Cc1c(-c2cnc(NCc3c(F)ccc4c3CCO4)n3cc(C#N)nc23)cnc(CN(C)C)c1F
C25H23F2N7O
475.503000
XMQRHCDCYAICKZ-UHFFFAOYSA-N O75530, Q09028 Polycomb protein EED, Histone-lysine N-methyltransferase EZH2
BindingDB, PubChem
BindingDB:BDBM513871; PubChem:CID155676957
Local ready
Direct docking supported
E3L021387
BDB021387
US11098059, Example 1
CC[C@H]1CN(C[C@@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(Br)cc21
C22H25BrN2O2
429.358000
NSYXJLZEQPXXPZ-SZFUDVHCSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515297; PubChem:CID155636477
Local ready
Direct docking supported
E3L021388
BDB021388
US11098059, Example 2
CC[C@H]1CN(C[C@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(Br)cc21
C22H25BrN2O2
429.358000
NSYXJLZEQPXXPZ-WVFSVQOHSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515298; PubChem:CID155636482
Local ready
Direct docking supported
E3L021389
BDB021389
US11098059, Example 3
CC[C@@H]1CN(C[C@@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(Br)cc21
C22H25BrN2O2
429.358000
NSYXJLZEQPXXPZ-PUCZYUMASA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515299; PubChem:CID155636488
Local ready
Direct docking supported
E3L021390
BDB021390
US11098059, Example 4
CC[C@@H]1CN(C[C@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(Br)cc21
C22H25BrN2O2
429.358000
NSYXJLZEQPXXPZ-OREJSRFESA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515300; PubChem:CID155636486
Local ready
Direct docking supported
E3L021391
BDB021391
US11098059, Example 9
CC1(C)CN(C[C@@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(-c3ncnn3C3CC3)cc21
C27H31N5O2
457.578000
RDJGIPKJLARPSA-BJKOFHAPSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515305; PubChem:CID155269483
Local ready
Direct docking supported
E3L021392
BDB021392
US11098059, Example 10
CCC1CN(C[C@@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(-c3ncnn3C3CC3)cc21
C27H31N5O2
457.578000
MKFVJVPIFLNNNU-WYSNEBGWSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515306; PubChem:CID155276695
Local ready
Direct docking supported
E3L021393
BDB021393
US11098059, Example 11
O=C1c2ccc(-c3ncnn3C3CC3)cc2C2(CCC2)CN1C[C@@H](O)[C@@H]1Cc2ccccc2CN1
C28H31N5O2
469.589000
SKLDQNBOLVKBJG-LOSJGSFVSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515307; PubChem:CID155269458
Local ready
Direct docking supported
E3L021394
BDB021394
US11098059, Example 12
CCC1CN(CC(O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(C(=O)N3C4CCC3COC4)cc21
C29H35N3O4
489.616000
LPPKXBXXUDNWIG-VOAOHMAESA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515308; PubChem:CID155095306
Local ready
Direct docking supported
E3L021395
BDB021395
US11098059, Example 13
CC[C@H]1CN(C[C@@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(C(=O)N3C4CCC3COC4)cc21
C29H35N3O4
489.616000
LPPKXBXXUDNWIG-QYQQPSHKSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515309; PubChem:CID155276691
Local ready
Direct docking supported
E3L021396
BDB021396
US11098059, Example 14
CC[C@H]1CN(C[C@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(C(=O)N3C4CCC3COC4)cc21
C29H35N3O4
489.616000
LPPKXBXXUDNWIG-GJIVGLNKSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515310; PubChem:CID155276688
Local ready
Direct docking supported
E3L021397
BDB021397
US11098059, Example 15
CC[C@@H]1CN(C[C@@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(C(=O)N3C4CCC3COC4)cc21
C29H35N3O4
489.616000
LPPKXBXXUDNWIG-JXSNDDKCSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515311; PubChem:CID155276689
Local ready
Direct docking supported
E3L021398
BDB021398
US11098059, Example 16
CC[C@@H]1CN(C[C@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(C(=O)N3C4CCC3COC4)cc21
C29H35N3O4
489.616000
LPPKXBXXUDNWIG-GPZZDHEUSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515312; PubChem:CID155276692
Local ready
Direct docking supported
E3L021399
BDB021399
US11098059, Example 17
CC1(C)CN(C[C@@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(Br)cc21
C22H25BrN2O2
429.358000
FLZFDCDDLIIXFV-VQTJNVASSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515313; PubChem:CID155095298
Local ready
Direct docking supported
E3L021400
BDB021400
US11098059, Example 18
CC1(C)CN(C[C@H](O)[C@@H]2Cc3ccccc3CN2)C(=O)c2ccc(Br)cc21
C22H25BrN2O2
429.358000
FLZFDCDDLIIXFV-PMACEKPBSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM515314; PubChem:CID155095295
Local ready
Direct docking supported