E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L031241
BDB031241
5-(2-Oxopyrrolidin-1-yl)-1,3-dihydrobenzimidazol-2-one
O=C1CCCN1c1ccc2[nH]c(=O)[nH]c2c1
C11H11N3O2
217.228000
WCJOWYPOCWXCIM-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627027; PubChem:CID137526171
Local ready
Direct docking supported
E3L031242
BDB031242
US11787802, Example 34
CC(C)c1nc2ccccc2n1-c1ccc2c(c1)[nH]c(=O)n2C
C18H18N4O
306.369000
AJIHBTOXNLWWLG-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627028; PubChem:CID137525566
Local ready
Direct docking supported
E3L031243
BDB031243
US11787802, Example 35
CC(C)c1nc2ccccc2n1-c1ccc2[nH]c(=O)n(C)c2c1
C18H18N4O
306.369000
HAGXUSPKGMSTFM-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627029; PubChem:CID137525795
Local ready
Direct docking supported
E3L031244
BDB031244
BDBM627030
O=c1[nH]c2cnc(-c3ccc(F)cc3)cc2[nH]1
C12H8FN3O
229.214000
HUPSAGSDHOBPGQ-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627030; PubChem:CID137525638
Local ready
Direct docking supported
E3L031245
BDB031245
5-(2,5-Difluorophenyl)-1,3-dihydrobenzimidazol-2-one
O=c1[nH]c2ccc(-c3cc(F)ccc3F)cc2[nH]1
C13H8F2N2O
246.216000
AHXDRAYYIXKPFA-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627031; PubChem:CID137525610
Local ready
Direct docking supported
E3L031246
BDB031246
5-(2,4-Difluorophenyl)-1,3-dihydrobenzimidazol-2-one
O=c1[nH]c2ccc(-c3ccc(F)cc3F)cc2[nH]1
C13H8F2N2O
246.216000
SPGIUHPEGKRMGR-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627032; PubChem:CID137525779
Local ready
Direct docking supported
E3L031247
BDB031247
BDBM627033
COc1ccc(Cc2ccc3[nH]c(=O)[nH]c3c2)cc1
C15H14N2O2
254.289000
KWTOEWGEPHRVDQ-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM627033
Local ready
Direct docking supported
E3L031248
BDB031248
BDBM627034
O=c1[nH]c2ccc(N3CCN(c4ccccn4)CC3)nc2[nH]1
C15H16N6O
296.334000
NCTLDQIXXQEMJO-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627034; PubChem:CID137525759
Local ready
Direct docking supported
E3L031249
BDB031249
5-(4-Pyrrol-1-ylphenyl)-1,3-dihydrobenzimidazol-2-one
O=c1[nH]c2ccc(-c3ccc(-n4cccc4)cc3)cc2[nH]1
C17H13N3O
275.311000
HBTBWSHCHROZSK-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627035; PubChem:CID137526353
Local ready
Direct docking supported
E3L031250
BDB031250
5-Quinolin-5-yl-1,3-dihydrobenzimidazol-2-one
O=c1[nH]c2ccc(-c3cccc4ncccc34)cc2[nH]1
C16H11N3O
261.284000
XLELRWWXLFDUPJ-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627036; PubChem:CID137525607
Local ready
Direct docking supported
E3L031251
BDB031251
1-Methyl-5-phenyl-3H-imidazo[4,5-b]pyridin-2-one
Cn1c(=O)[nH]c2nc(-c3ccccc3)ccc21
C13H11N3O
225.251000
ZFPOQOARQBQWDA-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627038; PubChem:CID137525559
Local ready
Direct docking supported
E3L031252
BDB031252
BDBM627039
CNC(=O)c1ccc2c(c1)nc(Cc1ccccc1OC)n2-c1ccc2[nH]c(=O)[nH]c2c1
C24H21N5O3
427.464000
PGOVNHSEQHVCQE-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627039; PubChem:CID137525964
Local ready
Direct docking supported
E3L031253
BDB031253
BDBM627040
CNC(=O)c1ccc2c(c1)nc(C(C)(C)C)n2-c1ccc2[nH]c(=O)[nH]c2c1
C20H21N5O2
363.421000
YAXUNHRGOPUZEM-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627040; PubChem:CID137525776
Local ready
Direct docking supported
E3L031254
BDB031254
BDBM627041
COC(=O)c1cccc2c1nc(C(C)C)n2-c1ccc2[nH]c(=O)[nH]c2c1
C19H18N4O3
350.378000
ZVIXMLNYOQMDRH-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627041; PubChem:CID137525775
Local ready
Direct docking supported
E3L031255
BDB031255
BDBM627042
COC(=O)c1ccc2nc(C(C)C)n(-c3ccc4[nH]c(=O)[nH]c4c3)c2c1
C19H18N4O3
350.378000
UILKHEHUOCVPKN-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627042; PubChem:CID142535919
Local ready
Direct docking supported
E3L031256
BDB031256
US11787802, Example 49
Cn1c(=O)n(C)c2cc(Nc3ccccc3[N+](=O)[O-])ccc21
C15H14N4O3
298.302000
VKLRHMOMUPPBSI-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627043; PubChem:CID49226728
Local ready
Direct docking supported
E3L031257
BDB031257
US11787802, Example 50
Cn1c(=O)n(C)c2cc(Nc3ccccc3N)ccc21
C15H16N4O
268.320000
MZNFNBURJGAQAZ-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627044; PubChem:CID137525769
Local ready
Direct docking supported
E3L031258
BDB031258
BDBM627045
O=C(NC1CCNCC1)c1ccc2[nH]c(=O)[nH]c2c1
C13H16N4O2
260.297000
LHKPXRWDEWNSFE-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627045; PubChem:CID83552084
Local ready
Direct docking supported
E3L031259
BDB031259
US11787802, Example 52
Cn1c(=O)[nH]c2ccc(Nc3ccccc3N)cc21
C14H14N4O
254.293000
SUDVIDUHRVPFAH-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627046; PubChem:CID137526036
Local ready
Direct docking supported
E3L031260
BDB031260
US11787802, Example 53
Cn1c(=O)[nH]c2cc(Nc3ccccc3N)ccc21
C14H14N4O
254.293000
VBVUYMPXRGFZOG-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM627047; PubChem:CID137526149
Local ready
Direct docking supported