E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L054941
BDB054941
Cobimetinib
O=C(c1ccc(F)c(F)c1Nc1ccc(I)cc1F)N1CC(O)([C@@H]2CCCCN2)C1
C21H21F3IN3O2
531.316000
BSMCAPRUBJMWDF-KRWDZBQOSA-N O14965, P51617, Q92630 Interleukin-1 receptor-associated kinase 1, Aurora kinase A, Dual specificity tyrosine-phosphorylation-regulated kinase 2
BindingDB, PubChem
BindingDB:BDBM50391802; PubChem:CID16222096
Local ready
Direct docking supported
E3L054942
BDB054942
BDBM50391895
NCCNc1nc(-c2ccncc2)nc2cnccc12
C14H14N6
266.308000
JHLONFVVTLRHIZ-UHFFFAOYSA-N O95835 Serine/threonine-protein kinase LATS1
BindingDB, PubChem
BindingDB:BDBM50391895; PubChem:CID71452928
Local ready
Direct docking supported
E3L054943
BDB054943
BDBM50392240
CC(C)C[C@@H](NC(=O)[C@@H](CC(C)C)NC(=O)[C@@H](CCCCN)NC(=O)[C@@H](CCC(=O)O)NC(=O)[C@@H](Cc1ccccc1)NC(=O)[C@@H](CC(N)=O)NC(=O)[C@@H](C)NC(=O)[C@@H](Cc1ccc(O)cc1)NC(=O)[C@@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H](C)NC(=O)[C@H](N)[C@@H](C)O)C(=O)N[C@H](CCCN=C(N)N)C(=O)O
C72H106N18O18
1511.748000
ALOCKGIGFHCPRC-PIJZXYEFSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392240; PubChem:CID71449500
Local ready
Direct docking supported
E3L054944
BDB054944
BDBM50392241
CC(C)C[C@@H](NC(=O)[C@@H](CC(C)C)NC(=O)[C@@H](CCCCN)NC(=O)[C@@H](CCC(=O)O)NC(=O)[C@@H](Cc1ccccc1)NC(=O)[C@@H](CC(N)=O)NC(=O)[C@@H](C)NC(=O)[C@@H](Cc1ccc(O)cc1)NC(=O)[C@@H](Cc1c[nH]c2cc(F)ccc12)NC(=O)[C@@H](C)NC(=O)[C@H](N)[C@@H](C)O)C(=O)N[C@H](CCCN=C(N)N)C(=O)O
C72H105FN18O18
1529.738000
GYJHSDCYPOKOAA-RPKCDFNFSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392241; PubChem:CID71449501
Local ready
Direct docking supported
E3L054945
BDB054945
BDBM50392242
CC(C)C[C@@H](NC(=O)[C@@H](CC(C)C)NC(=O)[C@@H](CCCCN)NC(=O)[C@@H](CCC(=O)O)NC(=O)[C@@H](Cc1ccc(C(F)(F)F)cc1)NC(=O)[C@@H](CC(N)=O)NC(=O)[C@@H](C)NC(=O)[C@@H](Cc1ccc(O)cc1)NC(=O)[C@@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H](C)NC(=O)[C@H](N)[C@@H](C)O)C(=O)N[C@H](CCCN=C(N)N)C(=O)O
C73H105F3N18O18
1579.745000
HCQJUIWZWMGJRQ-VJNMKLQESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392242; PubChem:CID71453126
Local ready
Direct docking supported
E3L054946
BDB054946
BDBM50392243
CC(C)C[C@@H](NC(=O)[C@@H](CC(C)C)NC(=O)[C@@H](CCCCN)NC(=O)[C@@H](CCC(=O)O)NC(=O)[C@@H](Cc1ccc(C(F)(F)F)cc1)NC(=O)[C@@H](CC(N)=O)NC(=O)[C@@H](C)NC(=O)[C@@H](Cc1ccc(O)cc1)NC(=O)[C@@H](Cc1c[nH]c2cc(F)ccc12)NC(=O)[C@@H](C)NC(=O)[C@H](N)[C@@H](C)O)C(=O)N[C@H](CCCN=C(N)N)C(=O)O
C73H104F4N18O18
1597.735000
IKFSHEISEVJQHA-RMRRZSPQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392243; PubChem:CID71449509
Local ready
Direct docking supported
E3L054947
BDB054947
BDBM50392244
CC(C)C[C@@H](NC(=O)[C@H]1CCCN1C(=O)[C@@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](N)CC(=O)O)C(=O)N[C@H](C)C(=O)N[C@H](Cc1ccccc1)C(=O)N[C@H](CCC(=O)O)C(=O)N[C@H](C)C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCN=C(N)N)C(=O)O
C75H105N17O17
1516.767000
ZEUMBESJMNEXFU-BXCAZVQPSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392244; PubChem:CID71460334
Local ready
Direct docking supported
E3L054948
BDB054948
Nutlin-2
CCOc1cc(OC)ccc1C1=N[C@@H](c2ccc(Br)cc2)[C@@H](c2ccc(Br)cc2)N1C(=O)N1CCN(CCO)CC1
C31H34Br2N4O4
686.445000
PVRYEWOXWGDQHA-URLMMPGGSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392531; PubChem:CID5288631
Local ready
Direct docking supported
E3L054949
BDB054949
BDBM50392533
CC1=C(C(=O)N2CCNC(=O)C2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C23H20Cl2N4O2S
487.412000
CXTFXWCECRLKQA-VQTJNVASSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392533; PubChem:CID71456576
Local ready
Direct docking supported
E3L054950
BDB054950
BDBM50392534
CCC1=C(C(=O)N2CCNC(=O)C2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C24H22Cl2N4O2S
501.439000
UPEPITCUKHSMLK-LEWJYISDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392534; PubChem:CID71453053
Local ready
Direct docking supported
E3L054951
BDB054951
BDBM50392535
CC(C)C1=C(C(=O)N2CCNC(=O)C2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C25H24Cl2N4O2S
515.466000
LNDPUCKALGGUTH-RBBKRZOGSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392535; PubChem:CID58007477
Local ready
Direct docking supported
E3L054952
BDB054952
BDBM50392536
CCCC1=C(C(=O)N2CCNC(=O)C2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C25H24Cl2N4O2S
515.466000
SOGIBWNBMKLYDX-FCHUYYIVSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392536; PubChem:CID71458425
Local ready
Direct docking supported
E3L054953
BDB054953
BDBM50392537
O=C1CN(C(=O)C2=C(C3CC3)N3C(=N[C@@H](c4ccc(Cl)cc4)[C@H]3c3ccc(Cl)cc3)S2)CCN1
C25H22Cl2N4O2S
513.450000
FIQHNKDEQBWNIL-LEWJYISDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392537; PubChem:CID68807602
Local ready
Direct docking supported
E3L054954
BDB054954
BDBM50392538
CC(C)(C)C1=C(C(=O)N2CCNC(=O)C2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C26H26Cl2N4O2S
529.493000
QRIYLDXMUXWZGG-LEWJYISDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392538; PubChem:CID68805209
Local ready
Direct docking supported
E3L054955
BDB054955
BDBM50392539
COCC1=C(C(=O)N2CCNC(=O)C2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C24H22Cl2N4O3S
517.438000
NCGOJPLUPHBCID-LEWJYISDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392539; PubChem:CID68954893
Local ready
Direct docking supported
E3L054956
BDB054956
BDBM50392540
CC(=O)N1CCN(C(=O)C2=C(C(C)C)N3C(=N[C@@H](c4ccc(Cl)cc4)[C@H]3c3ccc(Cl)cc3)S2)CC1
C27H28Cl2N4O2S
543.520000
BGUKZJSLKDRKJE-LADGPHEKSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392540; PubChem:CID71458426
Local ready
Direct docking supported
E3L054957
BDB054957
BDBM50392541
CC(C)C1=C(C(=O)N2CCC(C(=O)N(C)C)CC2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C29H32Cl2N4O2S
571.574000
WELOHIZGIXAUPL-UKILVPOCSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392541; PubChem:CID71449443
Local ready
Direct docking supported
E3L054958
BDB054958
BDBM50392542
CC(C)C1=C(C(=O)N2CCOCC2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C25H25Cl2N3O2S
502.467000
DYBQZQOKMHMOEG-RBBKRZOGSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392542; PubChem:CID24968163
Local ready
Direct docking supported
E3L054959
BDB054959
BDBM50392543
CC(C)C1=C(C(=O)N2CCNC(=O)CC2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C26H26Cl2N4O2S
529.493000
VGAAMXDVLNPTSK-JTHBVZDNSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392543; PubChem:CID68806861
Local ready
Direct docking supported
E3L054960
BDB054960
BDBM50392544
CC(C)C1=C(C(=O)N2CCN(CCO)CC2)SC2=N[C@@H](c3ccc(Cl)cc3)[C@@H](c3ccc(Cl)cc3)N21
C27H30Cl2N4O2S
545.536000
CGIRGTGKVJBXLP-LADGPHEKSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50392544; PubChem:CID44608507
Local ready
Direct docking supported