E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L058921
BDB058921
4-hydroxy-N'-(naphthalene-2-sulfonyl)benzohydrazide
O=C(NNS(=O)(=O)c1ccc2ccccc2c1)c1ccc(O)cc1
C17H14N2O4S
342.376000
LVIKGYITZHSWSM-UHFFFAOYSA-N Q92794 Histone acetyltransferase KAT6A
BindingDB, PubChem
BindingDB:BDBM50518874; PubChem:CID2367622
Local ready
Direct docking supported
E3L058922
BDB058922
4-cyano-N'-naphthalen-2-ylsulfonylbenzohydrazide
N#Cc1ccc(C(=O)NNS(=O)(=O)c2ccc3ccccc3c2)cc1
C18H13N3O3S
351.387000
PTXGBXAHGIFPRD-UHFFFAOYSA-N Q92794 Histone acetyltransferase KAT6A
BindingDB, PubChem
BindingDB:BDBM50518875; PubChem:CID48927665
Local ready
Direct docking supported
E3L058923
BDB058923
N'-(benzenesulfonyl)-2-phenylpyridine-4-carbohydrazide
O=C(NNS(=O)(=O)c1ccccc1)c1ccnc(-c2ccccc2)c1
C18H15N3O3S
353.403000
VYXRRWHTTNKTPJ-UHFFFAOYSA-N Q92794 Histone acetyltransferase KAT6A
BindingDB, PubChem
BindingDB:BDBM50518876; PubChem:CID135298661
Local ready
Direct docking supported
E3L058924
BDB058924
BDBM50519158
O=C(Nc1ccc2cc(C(=O)Nc3nccs3)ccc2c1)c1ccc(Cl)c(Cl)c1
C21H13Cl2N3O2S
442.327000
MRITYVDXXFOOAU-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM50519158; PubChem:CID138911334
Local ready
Direct docking supported
E3L058925
BDB058925
example 8 (cis racemate) [WO2017060855A1]
CCCCC1CCCN1C(=O)[C@@H]1CCC[C@H](c2cccc(-n3ncc(C(=O)O)c3C3CC3)c2)C1
C28H37N3O3
463.622000
UHBPMQISVQNVGD-PDOMDSBESA-N Q14145 Kelch-like ECH-associated protein 1
BindingDB, PubChem
BindingDB:BDBM50519234; PubChem:CID139030534
Local ready
Direct docking supported
E3L058926
BDB058926
BDBM50519235
O=C(O)COc1cccc(CNC(=O)Nc2nnc(-c3ccco3)o2)c1
C16H14N4O6
358.310000
COAUEHYQQBGZLC-UHFFFAOYSA-N Q14145 Kelch-like ECH-associated protein 1
BindingDB, PubChem
BindingDB:BDBM50519235; PubChem:CID70680427
Local ready
Direct docking supported
E3L058927
BDB058927
BDBM50519236
Fc1ccc(-c2nc(-c3ccc4nc[nH]c4c3)no2)cc1
C15H9FN4O
280.262000
LBOBFSYTLJJUGA-UHFFFAOYSA-N Q14145 Kelch-like ECH-associated protein 1
BindingDB, PubChem
BindingDB:BDBM50519236; PubChem:CID122180503
Local ready
Direct docking supported
E3L058928
BDB058928
BDBM50519386
CCCc1nc2c(C)cccc2n1Cc1ccc(-c2ccccc2C(=O)O)cc1
C25H24N2O2
384.479000
CUJWNLOIOITPFI-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50519386; PubChem:CID130417522
Local ready
Direct docking supported
E3L058929
BDB058929
BDBM50519387
CCCc1nc2c(F)cccc2n1Cc1ccc(-c2ccccc2C(=O)O)cc1
C24H21FN2O2
388.442000
SQDPYYHUIAEALK-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50519387; PubChem:CID155510942
Local ready
Direct docking supported
E3L058930
BDB058930
BDBM50519388
CCCc1nc2c(C(F)(F)F)cccc2n1Cc1ccc(-c2ccccc2C(=O)O)cc1
C25H21F3N2O2
438.449000
KUKNBTKHEMOFIQ-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50519388; PubChem:CID155549183
Local ready
Direct docking supported
E3L058931
BDB058931
BDBM50519389
CCCc1nc2c(Br)cccc2n1Cc1ccc(-c2ccccc2C(=O)O)cc1
C24H21BrN2O2
449.348000
GPNRXOVUEHGBHT-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50519389; PubChem:CID9933395
Local ready
Direct docking supported
E3L058932
BDB058932
BDBM50519390
CCCc1nc2c(Cl)cccc2n1Cc1ccc(-c2ccccc2C(=O)O)cc1
C24H21ClN2O2
404.897000
ZYPNFUWYPHOJIU-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50519390; PubChem:CID155554530
Local ready
Direct docking supported
E3L058933
BDB058933
Bz(4-tBu)-Ala-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)c1ccc(C(C)(C)C)cc1)C(=O)N[C@@H](CO)C(=O)OC
C37H62N6O8
718.937000
SQWGTAUPVFPVAQ-NDOOMZCZSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50519512; PubChem:CID155520561
Local ready
Direct docking supported
E3L058934
BDB058934
5-(Ethylsulfonyl)-2-(2-naphthalenyl)benzoxazole
CCS(=O)(=O)c1ccc2oc(-c3ccc4ccccc4c3)nc2c1
C19H15NO3S
337.400000
KSGCNXAZROJSNW-UHFFFAOYSA-N P35869 Aryl hydrocarbon receptor
BindingDB, PubChem
BindingDB:BDBM50519636; PubChem:CID25109292
Local ready
Direct docking supported
E3L058935
BDB058935
BDBM50519653
CC(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)NCC(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)NCCCC[C@H](NC(=O)COCCOCCNC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H]1CCCCNC(=O)C[C@H](NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(C)=O)[C@@H](C)O)C(=O)N[C@@H](Cc2cnc[nH]2)C(=O)N[C@@H](Cc2ccc(O)cc2)C(=O)N[C@@H](Cc2c[nH]c3ccccc23)C(=O)N1)[C@@H](C)O)C(N)=O
C153H245N53O37
3418.977000
TWCBWIUERVNFCJ-RXKYBBEDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50519653
Local ready
Direct docking supported
E3L058936
BDB058936
BDBM50519654
CC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@H]1CC(=O)NCCCC[C@@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)NCCOCCOCC(=O)N[C@@H](CCCCNC(=O)CC[C@@H]2NC(=O)[C@@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc3ccc4ccccc4c3)NC(=O)[C@@H](Cc3ccccc3)NC2=O)C(N)=O)[C@@H](C)O)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@H](Cc2cnc[nH]2)NC1=O)[C@@H](C)O
C132H196N40O31
2839.269000
NGDZEKYWNIWXCO-KOQUPJNSSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50519654
Local ready
Direct docking supported
E3L058937
BDB058937
BDBM50519655
CC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](Cc1cnc[nH]1)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)NCCOCCOCC(=O)N[C@@H](CCCCNC(=O)c1ccc(-c2c3ccc(=[N+](C)C)cc-3oc3cc(N(C)C)ccc23)c(C(=O)[O-])c1)C(N)=O)[C@@H](C)O)[C@@H](C)O
C110H144N22O28
2222.488000
VHDZAGRGAFLYHR-JNHXEXSRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50519655
Local ready
Direct docking supported
E3L058938
BDB058938
BDBM50519656
CC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CC(=O)NCCCC[C@@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)NCCOCCOCC(=O)N[C@@H](CCCCN)C(N)=O)[C@@H](C)O)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@H](Cc2cnc[nH]2)NC1=O)[C@@H](C)O
C87H127N21O23
1835.097000
QRXDAXBOTYUFEL-ZPJGIRPASA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50519656
Local ready
Direct docking supported
E3L058939
BDB058939
BDBM50519657
CC(C)C[C@H](NC(=O)COCCOCCNC(=O)CC[C@@H]1NC(=O)[C@@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc2ccc3ccccc3c2)NC(=O)[C@@H](Cc2ccccc2)NC1=O)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CC(=O)NCCCC[C@@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CO)C(N)=O)[C@@H](C)O)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@H](Cc2cnc[nH]2)NC1=O)[C@@H](C)O
C130H186N38O29
2745.155000
VRCXMVQRLOUJDF-UAFORRMMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50519657
Local ready
Direct docking supported
E3L058940
BDB058940
BDBM50519658
CC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CC(=O)NCCCC[C@@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)NCCOCCOCC(=O)N[C@@H](CCCCNC(=O)CC[C@@H]2NC(=O)[C@@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc3ccc4ccccc4c3)NC(=O)[C@@H](Cc3ccccc3)NC2=O)C(N)=O)[C@@H](C)O)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@H](Cc2cnc[nH]2)NC1=O)[C@@H](C)O
C138H200N40O31
2915.367000
CRDSBQPFJTXDPB-KSSJIFADSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50519658
Local ready
Direct docking supported