E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L060401
BDB060401
BDBM50549955
CO[C@@H]1[C@@H](n2cc(-c3ccc(Cl)c(Cl)c3F)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1ccc2ncsc2c1
C24H22Cl2FN5O5S
582.441000
HJFUZTRJZDWWPG-HWLDZIHSSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50549955; PubChem:CID162662900
Local ready
Direct docking supported
E3L060402
BDB060402
BDBM50549956
CO[C@@H]1[C@@H](n2cc(-c3ccc(Br)c(F)c3F)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1ccc2ncsc2c1
C24H22BrF2N5O5S
610.437000
VAHFPFWYMCULAM-HWLDZIHSSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50549956; PubChem:CID155201773
Local ready
Direct docking supported
E3L060403
BDB060403
BDBM50549957
CO[C@@H]1[C@@H](n2cc(-c3ccc(Cl)c(F)c3Cl)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1ccc2ncsc2c1
C24H22Cl2FN5O5S
582.441000
UTLFDRFGHDOZAU-HWLDZIHSSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50549957; PubChem:CID162671554
Local ready
Direct docking supported
E3L060404
BDB060404
BDBM50549958
CCS(=O)(=O)c1ccc(Cl)cc1N(C)C(=O)[C@@H]1O[C@H](CO)[C@H](O)[C@H](n2cc(-c3cc(F)c(F)c(F)c3)nn2)[C@H]1OC
C25H26ClF3N4O7S
619.018000
MEUCYOUPEAATQR-VLZGJKPMSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50549958; PubChem:CID162644127
Local ready
Direct docking supported
E3L060405
BDB060405
Galectin-3-IN-4
CO[C@@H]1[C@@H](n2cc(-c3ccc(Cl)c(F)c3F)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1ccc2ncsc2c1
C24H22ClF2N5O5S
565.986000
LGZJVCBTCCGZTI-HWLDZIHSSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50549959; PubChem:CID155201766
Local ready
Direct docking supported
E3L060406
BDB060406
BDBM50549960
CO[C@@H]1[C@@H](n2cc(-c3cc(F)c(F)c(F)c3)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1ccc2ncsc2c1
C24H22F3N5O5S
549.531000
QFOYPGLCAPECCY-SUHOFRIBSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50549960; PubChem:CID155201739
Local ready
Direct docking supported
E3L060407
BDB060407
Synucleozid
N=C(N)c1ccc(Nc2ccc(-c3cc4ccc(C(=N)N)cc4[nH]3)cc2)cc1
C22H20N6
368.444000
TZRXNWCLKYWDNH-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50550091; PubChem:CID435840
Local ready
Direct docking supported
E3L060408
BDB060408
BDBM50550092
CNC(=N)N/N=C(/C)c1ccc2oc3ccc(/C(C)=N/NC(=N)NC)cc3c2c1
C20H24N8O
392.467000
GDRFOQDJRLEMDH-UIXGLJBASA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50550092; PubChem:CID92529079
Local ready
Direct docking supported
E3L060409
BDB060409
BDBM50550093
c1cc2cc(-c3ccc4oc(C5=NCCN5)cc4c3)[nH]c2cc1C1=NCCN1
C22H19N5O
369.428000
YGJRBLKDKDPKDV-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50550093; PubChem:CID435423
Local ready
Direct docking supported
E3L060410
BDB060410
BDBM50550094
CNCC(=O)NC1=CC2C(=O)c3ccc(NC(=O)CNC)cc3C(=O)C2C=C1
C20H22N4O4
382.420000
YMWIJQUKVDHYIL-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50550094; PubChem:CID162647242
Local ready
Direct docking supported
E3L060411
BDB060411
Naphtho(1,2-g)pteridine-9,11-diamine
Nc1nc(N)c2nc3c(ccc4ccccc43)nc2n1
C14H10N6
262.276000
DHGUFUVSUAYZAH-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50550095; PubChem:CID339935
Local ready
Direct docking supported
E3L060412
BDB060412
BDBM50550144
CN(Cc1ccccc1)CC(O)COc1cccc(CNC2CCCC2)c1
C23H32N2O2
368.521000
WQVBZUJMJLULDY-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50550144; PubChem:CID162654729
Local ready
Direct docking supported
E3L060413
BDB060413
BDBM50550145
OC(COc1cccc(CNC2CCCC2)c1)CN1CCc2ccncc2C1
C23H31N3O2
381.520000
LDVDUBWSVPPRPA-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50550145; PubChem:CID118611079
Local ready
Direct docking supported
E3L060414
BDB060414
BDBM50550152
CC[C@H]1[C@@H](O)[C@@H]2[C@H]([C@@H](O)C[C@]3(C)[C@@H]([C@H](C)CCC(=O)O)CC[C@@H]23)[C@@]2(C)CC[C@@H](O)C[C@@H]12
C26H44O5
436.633000
UEXTVLKDFZEPMH-PAEMJXPASA-N P37231, Q07869 Peroxisome proliferator-activated receptor alpha, Peroxisome proliferator-activated receptor gamma
BindingDB
BindingDB:BDBM50550152
Local ready
Direct docking supported
E3L060415
BDB060415
Pf-06273340
CC(C)(CO)n1cc(C(=O)c2cncc(NC(=O)Cc3ccc(Cl)cn3)c2)c2cnc(N)nc21
C23H22ClN7O3
479.928000
BPIWZDNVMQQBQX-UHFFFAOYSA-N P51617 Interleukin-1 receptor-associated kinase 1
BindingDB, PubChem
BindingDB:BDBM50550246; PubChem:CID66571548
Local ready
Direct docking supported
E3L060416
BDB060416
4-[6-Amino-5-(4-chlorophenyl)-3-pyridinyl]benzoic acid
Nc1ncc(-c2ccc(C(=O)O)cc2)cc1-c1ccc(Cl)cc1
C18H13ClN2O2
324.767000
RVAGTSXRUDWALM-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM50550597; PubChem:CID162656879
Local ready
Direct docking supported
E3L060417
BDB060417
BDBM50551577
COc1ccc(-n2cc(C(=O)NCC(C)(C)N3CCOCC3)c(-c3ccccc3)n2)cc1
C25H30N4O3
434.540000
BJPPOTJAQZGVIA-UHFFFAOYSA-N P29375, P41229 Lysine-specific demethylase 5C, Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50551577; PubChem:CID155570013
Local ready
Direct docking supported
E3L060418
BDB060418
Siais117
COc1cc(N2CCC(NC(=O)CCCCCCCCCC(=O)N[C@H](C(=O)N3C[C@H](O)C[C@H]3C(=O)NCc3ccc(-c4scnc4C)cc3)C(C)(C)C)CC2)ccc1Nc1ncc(Cl)c(Nc2ccccc2P(C)(C)=O)n1
C57H76ClN10O7PS
1111.792000
DYUJLNPTOOBZBB-CCXZOALNSA-N Q9HC35 ALK tyrosine kinase receptor
BindingDB, PubChem
BindingDB:BDBM50551598; PubChem:CID141763005
Local ready
Direct docking supported
E3L060419
BDB060419
BDBM50552483
Nc1ccc(-c2cn(Cc3cc(C(=O)O)cc(-c4cccc(C(=O)O)c4)c3)nn2)cc1
C23H18N4O4
414.421000
ZBQJXILHBDHMAS-UHFFFAOYSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM50552483; PubChem:CID162661334
Local ready
Direct docking supported
E3L060420
BDB060420
BDBM50552555
Cc1ccc(-n2cc(COc3cccc4cnc(Nc5cccc(Cl)c5)nc34)nn2)c([N+](=O)[O-])c1
C24H18ClN7O3
487.907000
JEPGNFQKCRZPHJ-UHFFFAOYSA-N Q92630 Dual specificity tyrosine-phosphorylation-regulated kinase 2
BindingDB, PubChem
BindingDB:BDBM50552555; PubChem:CID162666194
Local ready
Direct docking supported