E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L021121
BDB021121
BDBM511623
Cc1c(C(=O)NCCCCCCCCNC(=O)COc2cccc3c2C(=O)N(C2CCC(=O)NC2=O)C3=O)sc2c1C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCN1CCN(C)CC1)c1nnc(C)n1-2
C50H60ClN11O8S
1010.619000
KBMWMYFFYVRGPQ-TYIYNAFKSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511623
Local ready
Direct docking supported
E3L021122
BDB021122
BDBM511624
Cc1cnc(Nc2ccc(N3CCN(C(=O)CCC(=O)NCCCCNC(=O)COc4cccc5c4C(=O)N(C4CCC(=O)NC4=O)C5=O)CC3)cc2)nc1Nc1cccc(S(=O)(=O)NC(C)(C)C)c1
C48H57N11O10S
980.118000
WKDBDNHSQBLSIF-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511624
Local ready
Direct docking supported
E3L021123
BDB021123
BDBM511625
Cc1cnc(Nc2ccc(N3CCN(C(=O)CCC(=O)NCCCCCCCCNC(=O)COc4cccc5c4C(=O)N(C4CCC(=O)NC4=O)C5=O)CC3)cc2)nc1Nc1cccc(S(=O)(=O)NC(C)(C)C)c1
C52H65N11O10S
1036.226000
OZWDLDLXMINLEV-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511625
Local ready
Direct docking supported
E3L021124
BDB021124
BDBM511626
Cc1cnc(Nc2ccc(N3CCN(C(=O)CCC(=O)NCCCOCCOCCOCCCNC(=O)COc4cccc5c4C(=O)N(C4CCC(=O)NC4=O)C5=O)CC3)cc2)nc1Nc1cccc(S(=O)(=O)NC(C)(C)C)c1
C54H69N11O13S
1112.277000
RDUUOZOVVAJAKF-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511626
Local ready
Direct docking supported
E3L021125
BDB021125
BDBM511627
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCNC(=O)CNc1cccc3c1CN(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C38H40ClN9O5S
770.316000
GSWRJJUJRPXSPR-XLTVJXRZSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511627
Local ready
Direct docking supported
E3L021126
BDB021126
BDBM511628
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCNC(=O)Cc1cccc3c1C(=O)N(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C38H37ClN8O6S
769.284000
BFZZIGPNZLXGRV-QBHOUYDASA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511628
Local ready
Direct docking supported
E3L021127
BDB021127
PROTAC BET Degrader-10
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCC(=O)NCc1cccc3c1C(=O)N(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C39H39ClN8O6S
783.311000
KVKRYCAWRGWYNN-MBMZGMDYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM511629; PubChem:CID124190914
Local ready
Direct docking supported
E3L021128
BDB021128
BDBM511630
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCOCCCNC(=O)COc1cccc3c1C(=O)N(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C40H41ClN8O8S
829.336000
WJAYJAKMQSJKDW-MBMZGMDYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511630
Local ready
Direct docking supported
E3L021129
BDB021129
BDBM511631
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCOCCOCCOc1cccc3c1C(=O)N(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C38H38ClN7O8S
788.283000
XYDZHZCXCJNSIB-QBHOUYDASA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511631
Local ready
Direct docking supported
E3L021130
BDB021130
BDBM511632
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCc1ccc(CNC(=O)COc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)cc1)c1nnc(C)n1-2
C42H37ClN8O7S
833.327000
ODYIWGILJYUPOR-UFXYQILXSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511632
Local ready
Direct docking supported
E3L021131
BDB021131
BDBM511633
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCC(=O)Nc1cccc3c1CN(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C37H37ClN8O5S
741.274000
WSFUNVYDDZKPSU-MBMZGMDYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511633
Local ready
Direct docking supported
E3L021132
BDB021132
BDBM511634
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCC(=O)Nc1cccc3c1CN(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C39H41ClN8O5S
769.328000
DCGPUMBJALMCLB-UFXYQILXSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511634
Local ready
Direct docking supported
E3L021133
BDB021133
BDBM511635
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCC(=O)Nc1cccc3c1CN(C1CCC(=O)NC1=O)C3=O)c1nnc(C)n1-2
C40H43ClN8O5S
783.355000
FKGDRMFOMMYLPA-FSRLHOSWSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511635
Local ready
Direct docking supported
E3L021134
BDB021134
BDBM511636
COc1cc(C(=O)NCCCCCCCCNC(=O)COc2cccc3c2C(=O)N(C2CCC(=O)NC2=O)C3=O)ccc1Nc1ccc2c(n1)N(C1CCCC1)[C@H](C)C(=O)N2C
C45H54N8O9
850.974000
IXJZXJGZWGBOTA-KOBZZRQBSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511636
Local ready
Direct docking supported
E3L021135
BDB021135
BDBM511637
COc1cc(C(=O)NCCCOCCOCCOCCCNC(=O)COc2cccc3c2C(=O)N(C2CCC(=O)NC2=O)C3=O)ccc1Nc1ccc2c(n1)N(C1CCCC1)[C@H](C)C(=O)N2C
C47H58N8O12
927.025000
SQZCVHULUGNGTG-ZMLFZXNESA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM511637
Local ready
Direct docking supported
E3L021136
BDB021136
3-(2-Methyl-4-oxoquinazolin-3-yl)pyrrolidine-2,5-dione
Cc1nc2ccccc2c(=O)n1C1CC(=O)NC1=O
C13H11N3O3
257.249000
PYRVSMAKAVEALW-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM511646; PubChem:CID121448562
Local ready
Direct docking supported
E3L021137
BDB021137
BDBM511649
O=C1CCC(N2C(=O)c3ccc(C(=O)NCc4ccccc4)cc3C2=O)C(=O)N1
C21H17N3O5
391.383000
ZIHUTMFSSZFOJL-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM511649; PubChem:CID121439770
Local ready
Direct docking supported
E3L021138
BDB021138
E3 ligase Ligand 23
O=C1CCC(N2C(=O)c3cccc(NCc4ccccc4)c3C2=O)C(=O)N1
C20H17N3O4
363.373000
JBYQCGLMICPOSQ-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM511650; PubChem:CID9947122
Local ready
Direct docking supported
E3L021139
BDB021139
BDBM511652
CC(C)Nc1cccc2c1C(=O)N(C1CCC(=O)NC1=O)C2=O
C16H17N3O4
315.329000
BTODVRFBCGOZGM-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM511652; PubChem:CID121439781
Local ready
Direct docking supported
E3L021140
BDB021140
BDBM511653
Cc1cccc2c1C(=O)N(C1CCC(=O)NC1=O)C2=O
C14H12N2O4
272.260000
PUEJOCVNXNAMGP-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM511653; PubChem:CID9860285
Local ready
Direct docking supported