E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L026401
BDB026401
BDBM557659
O=C1CCC(N2C[C@H](c3cccc(Br)c3)OC2=O)C(=O)N1
C14H13BrN2O4
353.172000
KUQQFAJLGAYPQZ-RRKGBCIJSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM557659; PubChem:CID138496394
Local ready
Direct docking supported
E3L026402
BDB026402
BDBM557660
Cn1c(=O)n(C2CCC(=O)NC2=O)c2ccc(CCCOCCOCCOCCOCCNC(=O)OC(C)(C)C)cc21
C29H44N4O9
592.690000
FMONLSATEBTIDW-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM557660; PubChem:CID138496397
Local ready
Direct docking supported
E3L026403
BDB026403
BDBM557661
Cn1c(=O)n(C2CCC(=O)NC2=O)c2cccc(C#CCOCCOCCNC(=O)OC(C)(C)C)c21
C25H32N4O7
500.552000
SHNIDPKWAVGNSF-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM557661; PubChem:CID138496395
Local ready
Direct docking supported
E3L026404
BDB026404
BDBM557662
Cn1c(=O)n(C2CCC(=O)NC2=O)c2ccc(C(N)=O)cc21
C14H14N4O4
302.290000
IIRMGEPJUGJKIN-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM557662; PubChem:CID138491638
Local ready
Direct docking supported
E3L026405
BDB026405
US11365205, Example 1
Cn1cnc2ccc(CN3CCN(CC(O)CN4CCc5ccccc5C4)C3=O)cc21
C24H29N5O2
419.529000
WGLDMWPZXFXJCC-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558723; PubChem:CID139527006
Local ready
Direct docking supported
E3L026406
BDB026406
US11365205, Example 1a
Cn1cnc2ccc(CN3CCN(C[C@H](O)CN4CCc5ccccc5C4)C3=O)cc21
C24H29N5O2
419.529000
WGLDMWPZXFXJCC-OAQYLSRUSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558724; PubChem:CID165112644
Local ready
Direct docking supported
E3L026407
BDB026407
US11365205, Example 1b
Cn1cnc2ccc(CN3CCN(C[C@@H](O)CN4CCc5ccccc5C4)C3=O)cc21
C24H29N5O2
419.529000
WGLDMWPZXFXJCC-NRFANRHFSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558725; PubChem:CID165112645
Local ready
Direct docking supported
E3L026408
BDB026408
US11365205, Example 2
CC1(C)CN(Cc2ccc(C#N)cc2)C(=O)N1CC(O)CN1CCc2ccccc2C1
C25H30N4O2
418.541000
CFWIOFLDKMVDHR-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558726; PubChem:CID139526990
Local ready
Direct docking supported
E3L026409
BDB026409
US11365205, Example 2a
CC1(C)CN(Cc2ccc(C#N)cc2)C(=O)N1C[C@H](O)CN1CCc2ccccc2C1
C25H30N4O2
418.541000
CFWIOFLDKMVDHR-HSZRJFAPSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558727; PubChem:CID165112646
Local ready
Direct docking supported
E3L026410
BDB026410
US11365205, Example 2b
CC1(C)CN(Cc2ccc(C#N)cc2)C(=O)N1C[C@@H](O)CN1CCc2ccccc2C1
C25H30N4O2
418.541000
CFWIOFLDKMVDHR-QHCPKHFHSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558728; PubChem:CID165112647
Local ready
Direct docking supported
E3L026411
BDB026411
US11365205, Example 3
CN(C)c1ccc(CN2CCN(CC(O)CN3CCc4ccccc4C3)C2=O)cc1
C24H32N4O2
408.546000
GOJPJXOCXSMUBD-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558729; PubChem:CID139527146
Local ready
Direct docking supported
E3L026412
BDB026412
US11365205, Example 4
Cn1nccc1CN1CCN(CC(O)CN2CCc3ccccc3C2)C1=O
C20H27N5O2
369.469000
DSPGJVJPTLFOSL-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558730; PubChem:CID139527147
Local ready
Direct docking supported
E3L026413
BDB026413
US11365205, Example 5
Cc1ccc(CN2CC(C)(C)N(CC(O)CN3CCc4ccccc4C3)C2=O)cc1
C25H33N3O2
407.558000
HTZSSZPITIPXQB-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558731; PubChem:CID139526838
Local ready
Direct docking supported
E3L026414
BDB026414
US11365205, Example 6
Cc1ccc(CN2CC3(CC3)N(CC(O)CN3CCc4ccccc4C3)C2=O)cn1
C24H30N4O2
406.530000
CABJCHJFCRCKHC-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558732; PubChem:CID139526835
Local ready
Direct docking supported
E3L026415
BDB026415
US11365205, Example 7
Cc1ccc(CN2CC(C)(C)N(CC(O)CN3CCc4ccccc4C3)C2=O)cn1
C24H32N4O2
408.546000
YZDAQMVMRAKSDZ-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558733; PubChem:CID139526839
Local ready
Direct docking supported
E3L026416
BDB026416
US11365205, Example 8
Cc1ccc(CN2CC3(CCCC3)N(CC(O)CN3CCc4ccccc4C3)C2=O)cn1
C26H34N4O2
434.584000
LQTRETZKPAQSNX-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558734; PubChem:CID139527039
Local ready
Direct docking supported
E3L026417
BDB026417
US11365205, Example 9
Cc1ccc(CN2CC3(CCC3)N(CC(O)CN3CCc4ccccc4C3)C2=O)cn1
C25H32N4O2
420.557000
JGXVARXXECMECH-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558735; PubChem:CID139527050
Local ready
Direct docking supported
E3L026418
BDB026418
US11365205, Example 10
Cc1ccc(CN2C(=O)N(CC(O)CN3CCc4ccccc4C3)CC2(C)C)cc1
C25H33N3O2
407.558000
QWYDWBAFWBCOEP-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558736; PubChem:CID139527041
Local ready
Direct docking supported
E3L026419
BDB026419
US11365205, Example 11
CS(=O)(=O)c1ccc(CN2CCN(CC(O)CN3CCc4ccccc4C3)C2=O)cc1
C23H29N3O4S
443.569000
ACMUUVXHBJKNMB-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558737; PubChem:CID139527208
Local ready
Direct docking supported
E3L026420
BDB026420
US11365205, Example 12
CC1(C)CN(Cc2ccc(C#N)nc2)C(=O)N1CC(O)CN1CCc2ccccc2C1
C24H29N5O2
419.529000
CUKICEGYWLRJIP-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM558738; PubChem:CID139527210
Local ready
Direct docking supported