E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L029721
BDB029721
US11623929, Example 10
COC(=O)c1ccc(N2CCC3(CC(=O)NC3=O)C2)nc1
C14H15N3O4
289.291000
GYDGGFJIHASCKP-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM600508; PubChem:CID150373133
Local ready
Direct docking supported
E3L029722
BDB029722
US11623929, Example 11
O=C1CC2(CCN(c3nc4ccccc4s3)C2)C(=O)N1
C14H13N3O2S
287.344000
UDRDPSVGVXICRB-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM600509; PubChem:CID151986076
Local ready
Direct docking supported
E3L029723
BDB029723
US11623929, Example 12
O=C1CC2(CCN(C(=O)c3cnn4ccccc34)C2)C(=O)N1
C15H14N4O3
298.302000
WDZJVWSRFXJQFY-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM600510; PubChem:CID152244271
Local ready
Direct docking supported
E3L029724
BDB029724
7-Benzoyl-2,7-diazaspiro[4.4]nonane-1,3-dione
O=C1CC2(CCN(C(=O)c3ccccc3)C2)C(=O)N1
C14H14N2O3
258.277000
RQGVCBYHXMUZAF-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM600511; PubChem:CID146764559
Local ready
Direct docking supported
E3L029725
BDB029725
US11623929, Example 14
O=C1C[C@@]2(CCN(C(=O)c3ccc4scnc4c3)C2)C(=O)N1
C15H13N3O3S
315.354000
DMMCKRVBNHWAOD-OAHLLOKOSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM600512; PubChem:CID156142598
Local ready
Direct docking supported
E3L029726
BDB029726
US11623929, Example 15
O=C1C[C@]2(CCN(C(=O)c3ccc4scnc4c3)C2)C(=O)N1
C15H13N3O3S
315.354000
DMMCKRVBNHWAOD-HNNXBMFYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM600513; PubChem:CID156142291
Local ready
Direct docking supported
E3L029727
BDB029727
US11639355, Example 1-I
COc1ncc(-c2nc3c(n2C(C)C)[C@H](c2ccc(Cl)cc2)N(c2ccc4c(c2)OCO4)C3=O)c(OC)n1
C27H24ClN5O5
533.972000
SRELFASBIUSRRN-QFIPXVFZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601679; PubChem:CID139500065
Local ready
Direct docking supported
E3L029728
BDB029728
US11639355, Example 2
COc1ncc(-c2nc3c(n2C(C)C)C(c2ccc(Cl)cc2)N(c2ccc4scnc4c2)C3=O)c(OC)n1
C27H23ClN6O3S
547.040000
NOPPDKGKHIJYAR-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601680; PubChem:CID139500207
Local ready
Direct docking supported
E3L029729
BDB029729
US11639355, Example 3
COc1ncc(-c2nc3c(n2C(C)C)C(c2ccc(Cl)cc2)N(c2ccc4ncsc4c2)C3=O)c(OC)n1
C27H23ClN6O3S
547.040000
BNWSNWAGNJWLLP-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601681; PubChem:CID139500197
Local ready
Direct docking supported
E3L029730
BDB029730
US11639355, Example 4
COc1ncc(-c2nc3c(n2C(C)C)C(c2ccc(Cl)cc2)N(c2ccc4c(c2)OC(F)(F)O4)C3=O)c(OC)n1
C27H22ClF2N5O5
569.952000
RVZYZGJENVZMRY-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601682; PubChem:CID139500211
Local ready
Direct docking supported
E3L029731
BDB029731
US11639355, Example 5
COc1ncc(-c2nc3c(n2C(C)C)C(c2ccc(Cl)cc2)N(c2cc(F)c4c(c2)OCO4)C3=O)c(OC)n1
C27H23ClFN5O5
551.962000
AUYPDCJTVVOMAL-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601683; PubChem:CID139500212
Local ready
Direct docking supported
E3L029732
BDB029732
US11639355, Example 7-II
COc1ncc(-c2nc3c(n2C(C)C)[C@@](C)(c2ccc(Cl)cc2)N(c2ccc4c(c2)OCO4)C3=O)c(OC)n1
C28H26ClN5O5
547.999000
VHZNEKDCJYXJMC-MUUNZHRXSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601684; PubChem:CID139500080
Local ready
Direct docking supported
E3L029733
BDB029733
US11639355, Example 8-I
COc1ncc(-c2nc3c(n2C(C)C)[C@H](c2ccc(Cl)s2)N(c2ccc4c(c2)OCO4)C3=O)c(OC)n1
C25H22ClN5O5S
540.001000
WMJFWZADPVSDPM-FQEVSTJZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601685; PubChem:CID139500181
Local ready
Direct docking supported
E3L029734
BDB029734
US11639355, Example 9I
COc1ncc(-c2nc3c(n2C(C)C)[C@H](c2ccc(Cl)s2)N(c2cc4c(cc2F)OCO4)C3=O)c(OC)n1
C25H21ClFN5O5S
557.991000
XCSIMLPZVYFALB-FQEVSTJZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601686; PubChem:CID139500182
Local ready
Direct docking supported
E3L029735
BDB029735
US11639355, Example 10-I
COc1ncc(-c2nc3c(n2C(C)C)[C@@H](c2ccc(Cl)s2)N(c2cc4c(cc2Cl)OCO4)C3=O)c(OC)n1
C25H21Cl2N5O5S
574.446000
JZYMOIFOKLJNGS-HXUWFJFHSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601687; PubChem:CID139500083
Local ready
Direct docking supported
E3L029736
BDB029736
US11639355, Example 11-I
COc1ncc(-c2nc3c(n2C(C)C)[C@H](c2ccc(Cl)cc2)N(c2cc(Cl)c4c(c2)OCO4)C3=O)c(OC)n1
C27H23Cl2N5O5
568.417000
HGDOAGYSQBILFW-NRFANRHFSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601690; PubChem:CID139500190
Local ready
Direct docking supported
E3L029737
BDB029737
US11639355, Example 12-I
COc1ncc(-c2nc3c(n2C(C)C)[C@H](c2ccc(Cl)cc2)N(c2cc(C)c4c(c2)OCO4)C3=O)c(OC)n1
C28H26ClN5O5
547.999000
ACLLXTVQPKMSMX-QFIPXVFZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601692; PubChem:CID139500063
Local ready
Direct docking supported
E3L029738
BDB029738
US11639355, Example 13-I
COc1ncc(-c2nc3c(n2C(C)C)[C@@H](c2ccc(Cl)cc2)N(c2cc(Cl)cn4cnnc24)C3=O)c(OC)n1
C26H22Cl2N8O3
565.421000
XREDYCIWZNCVFG-HXUWFJFHSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601693; PubChem:CID139500078
Local ready
Direct docking supported
E3L029739
BDB029739
US11639355, Example 14-II
COc1ncc(-c2nc3c(n2C(C)C)[C@@H](c2ccc(Cl)cc2)N(c2cc(Cl)cn4ccnc24)C3=O)c(OC)n1
C27H23Cl2N7O3
564.433000
FDDSITCTOGNKTQ-OAQYLSRUSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601694; PubChem:CID139500084
Local ready
Direct docking supported
E3L029740
BDB029740
US11639355, Example 15
COc1ncc(-c2nc3c(n2C(C)C)C(c2ccc(Cl)cc2)N(c2cc(Cl)cc4[nH]ncc24)C3=O)c(OC)n1
C27H23Cl2N7O3
564.433000
PUZLQFUMPKIPOQ-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM601695; PubChem:CID139500060
Local ready
Direct docking supported