E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003421
BDB003421
US20250368640, Example 15
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CC5CCN(c6ccc(NC7CCC(=O)NC7=O)cc6F)CC5)C4=O)c3)c(Cl)c12
C36H39ClFN7O3
672.205000
RVTAPSGHSAMENX-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72268; PubChem:CID176550088
Local ready
Direct docking supported
E3L003422
BDB003422
US20250368640, Example 16
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCC5CCN(c6ccc(NC7CCC(=O)NC7=O)cc6F)CC5)C4=O)c3)c(Cl)c12
C37H41ClFN7O3
686.232000
OFUMGLHRVKJRKB-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72269; PubChem:CID176550087
Local ready
Direct docking supported
E3L003423
BDB003423
US20250368640, Example 17
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CCN(c6ccc(C7CCC(=O)NC7=O)cc6)CC5)C4=O)c3)c(Cl)c12
C36H40ClN7O3
654.215000
IBFRVIKKFXTGLN-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72270; PubChem:CID178254984
Local ready
Direct docking supported
E3L003424
BDB003424
US20250368640, Example 18
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CCN(c6ccc(NC7CCC(=O)NC7=O)cc6F)CC5)C4=O)c3)c(Cl)c12
C36H40ClFN8O3
687.220000
AUDIHXHCFKQFTA-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72273; PubChem:CID178254985
Local ready
Direct docking supported
E3L003425
BDB003425
BDBM72275
CCOC(=O)/C=C/C(=O)OCC(=O)NC(c1ccccc1)c1ccccc1
C21H21NO5
367.401000
IAIQVESVEHEGDS-BUHFOSPRSA-N O15151, Q99728 Protein Mdm4, BRCA1-associated RING domain protein 1
BindingDB, PubChem
BindingDB:BDBM72275; PubChem:CID5889878
Local ready
Direct docking supported
E3L003426
BDB003426
BDBM72507
Clc1ccc(/N=c2\ssnc2Cl)nc1
C7H3Cl2N3S2
264.162000
WMFVRSWPSFMZFZ-XFFZJAGNSA-N O14727 Apoptotic protease-activating factor 1
BindingDB
BindingDB:BDBM72507
Local ready
Direct docking supported
E3L003427
BDB003427
BDBM72611
CCOC(=O)CSc1nc2c([nH]1)c(=O)n(C)c(=O)n2C
C11H14N4O4S
298.324000
WDZPRUYBWRCQBQ-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72611; PubChem:CID737559
Local ready
Direct docking supported
E3L003428
BDB003428
BDBM72612
CCOC(=O)CCSc1nc2c([nH]1)c(=O)n(C)c(=O)n2C
C12H16N4O4S
312.351000
RZWVUPOQICYBNR-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72612; PubChem:CID155185573
Local ready
Direct docking supported
E3L003429
BDB003429
BDBM72613
Cn1c(=O)c2[nH]c(SCC(=O)OC(C)(C)C)nc2n(C)c1=O
C13H18N4O4S
326.378000
NRHSIVRPKMBJFZ-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72613; PubChem:CID155704799
Local ready
Direct docking supported
E3L003430
BDB003430
BDBM72614
Cn1c(=O)c2[nH]c(SCc3ccccc3)nc2n(C)c1=O
C14H14N4O2S
302.359000
BDKCWWUFYQKJJF-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72614; PubChem:CID253861
Local ready
Direct docking supported
E3L003431
BDB003431
BDBM72615
Cn1c(=O)c2[nH]c(SCc3ccc(F)cc3)nc2n(C)c1=O
C14H13FN4O2S
320.349000
WQVRNIPQWSPEPR-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72615; PubChem:CID155185458
Local ready
Direct docking supported
E3L003432
BDB003432
BDBM72616
Cn1c(=O)c2[nH]c(SCc3c(Cl)cccc3Cl)nc2n(C)c1=O
C14H12Cl2N4O2S
371.249000
WAOCXCKQYWMLKK-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72616; PubChem:CID155185275
Local ready
Direct docking supported
E3L003433
BDB003433
BDBM72617
Cc1ccc(CSc2nc3c([nH]2)c(=O)n(C)c(=O)n3C)cc1
C15H16N4O2S
316.386000
YVQTYGLVQRNFCB-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72617; PubChem:CID2147959
Local ready
Direct docking supported
E3L003434
BDB003434
BDBM72618
Cn1c(=O)c2[nH]c(SCCN3C(=O)c4ccccc4C3=O)nc2n(C)c1=O
C17H15N5O4S
385.405000
HMLXOPBSZRKOKN-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72618; PubChem:CID167133156
Local ready
Direct docking supported
E3L003435
BDB003435
BDBM72619
Cn1c(=O)[nH]c2nc(SCCN3CCOCC3)[nH]c2c1=O
C12H17N5O3S
311.367000
GINZCGGZNGQGDK-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72619; PubChem:CID155185374
Local ready
Direct docking supported
E3L003436
BDB003436
BDBM72620
Cn1c(=S)c2[nH]c(SCCN3CCOCC3)nc2n(C)c1=O
C13H19N5O2S2
341.462000
XHNSOGDMSSHQFY-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72620; PubChem:CID4361023
Local ready
Direct docking supported
E3L003437
BDB003437
2,6-Dithiouric acid
O=c1[nH]c2[nH]c(=S)[nH]c(=S)c2[nH]1
C5H4N4OS2
200.248000
SOQYJXVHBQVRDB-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72621; PubChem:CID3246111
Local ready
Direct docking supported
E3L003438
BDB003438
BDBM72623
Cn1c(=O)c2c(ncn2CCCC(=O)O)n(C)c1=O
C11H14N4O4
266.257000
KCQMWMWEALWVLJ-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72623; PubChem:CID104071
Local ready
Direct docking supported
E3L003439
BDB003439
BDBM72624
Cn1c(=S)[nH]c2nc(SCCN3CCCC3)[nH]c2c1=O
C12H17N5OS2
311.436000
UNYSXMUNEROJGW-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72624; PubChem:CID155185539
Local ready
Direct docking supported
E3L003440
BDB003440
BDBM72625
Cn1c(=O)c2[nH]c(SCCN3CCOCC3)nc2n(C)c1=S
C13H19N5O2S2
341.462000
OVDZYZANTZBNCJ-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM72625; PubChem:CID264524
Local ready
Direct docking supported