E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003401
BDB003401
BDBM71432
COc1ccc(S(=O)(=O)N=C2C=C(Nc3ccc(O)cc3)C(=O)c3ccccc32)cc1
C23H18N2O5S
434.473000
BQUUTNOUIXDXTN-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM71432; PubChem:CID4224502
Local ready
Direct docking supported
E3L003402
BDB003402
BDBM71433
Cc1ccc(C)c(S(=O)(=O)/N=C2\C=C(NS(=O)(=O)c3ccccc3)C(=O)c3ccccc32)c1
C24H20N2O5S2
480.567000
BMOQFLLXUWAROU-NJNXFGOHSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM71433; PubChem:CID24789788
Local ready
Direct docking supported
E3L003403
BDB003403
BDBM71455
COc1ccc(S(=O)(=O)Nc2cc(SCC(=O)O)c(O)c3ccccc23)cc1
C19H17NO6S2
419.480000
WWPDFQGBFIREKS-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM71455; PubChem:CID2058961
Local ready
Direct docking supported
E3L003404
BDB003404
BDBM71467
Cc1cc(C(=O)NN=Cc2c(C)[nH]n(-c3ccccc3)c2=O)[nH]n1
C16H16N6O2
324.344000
AQHGKOVHWKQVIE-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM71467; PubChem:CID773129
Local ready
Direct docking supported
E3L003405
BDB003405
BDBM71487
COc1ccc(OCc2cc(C(=O)NC3CCOC(C)(C)C3)no2)c2ccccc12
C23H26N2O5
410.470000
LXHCRNLYOQJFHB-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM71487; PubChem:CID24817510
Local ready
Direct docking supported
E3L003406
BDB003406
BDBM71505
CCc1ccc(S(=O)(=O)/N=C2\C=C(NS(=O)(=O)c3ccccc3)C(=O)c3ccccc32)cc1
C24H20N2O5S2
480.567000
BVHFEGZKDGKGSM-YYDJUVGSSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM71505; PubChem:CID22525634
Local ready
Direct docking supported
E3L003407
BDB003407
1-Benzyl-3-(decoxymethyl)benzimidazol-1-ium;chloride
CCCCCCCCCCOCn1c[n+](Cc2ccccc2)c2ccccc21
C25H35N2O+
379.568000
STZOUNYUCWCNBI-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM71524; PubChem:CID3799303
Local ready
Direct docking supported
E3L003408
BDB003408
Primaquine
COc1cc(NC(C)CCCN)c2ncccc2c1
C15H21N3O
259.353000
INDBQLZJXZLFIT-UHFFFAOYSA-N Q9HCI5 Melanoma-associated antigen E1
BindingDB, PubChem
BindingDB:BDBM71542; PubChem:CID4908
Local ready
Direct docking supported
E3L003409
BDB003409
US20250368640, Example 1
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CC(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7)C5)C4=O)c3)c(Cl)c12
C37H38ClN7O4
680.209000
OFBZJXISFYAQER-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72252; PubChem:CID174301119
Local ready
Direct docking supported
E3L003410
BDB003410
US20250368640, Example 2
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CC(c6ccc7c(c6)CN(C6CCC(=O)NC6=O)C7=O)C5)C4=O)c3)c(Cl)c12
C37H38ClN7O4
680.209000
SEUMAPMHQOQPJX-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72253; PubChem:CID174301120
Local ready
Direct docking supported
E3L003411
BDB003411
US20250368640, Example 3
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CCC(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)C4=O)c3)c(Cl)c12
C39H40ClN7O5
722.246000
LTVVZKGLQXKLFN-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72254; PubChem:CID174301173
Local ready
Direct docking supported
E3L003412
BDB003412
US20250368640, Example 4
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CCN(c6ccc7c(N8CCC(=O)NC8=O)cccc7c6)CC5)C4=O)c3)c(Cl)c12
C39H41ClN8O3
705.263000
SZHUKWBXBJXMBF-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72255; PubChem:CID174301174
Local ready
Direct docking supported
E3L003413
BDB003413
US20250368640, Example 5
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CC=C(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)C4=O)c3)c(Cl)c12
C39H38ClN7O5
720.230000
PXWJBXGYEXFWGV-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72257; PubChem:CID174301175
Local ready
Direct docking supported
E3L003414
BDB003414
US20250368640, Example 6
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CC(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)C5)C4=O)c3)c(Cl)c12
C37H36ClN7O5
694.192000
TVHOEPKOCNGDDS-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72258; PubChem:CID174301176
Local ready
Direct docking supported
E3L003415
BDB003415
US20250368640, Example 7
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CCN5CCN(c6cc7c(cc6F)C(=O)N(C6CCC(=O)NC6=O)C7)CC5)C4=O)c3)c(Cl)c12
C38H40ClFN8O4
727.241000
PCIVNFBLQQJRQR-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72259; PubChem:CID174301177
Local ready
Direct docking supported
E3L003416
BDB003416
PROTAC GSPT1 degrader-2
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CC5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)C4=O)c3)c(Cl)c12
C38H38ClN7O5
708.219000
RQRVDLHEZAZZNS-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72260; PubChem:CID172420089
Local ready
Direct docking supported
E3L003417
BDB003417
US20250368640, Example 9
O=C1CCC(N2C(=O)c3cc(F)c(N4CCC(CCN5CCCN(c6cccc(-c7cnc8[nH]cc(C9CC9)c8c7Cl)c6)C5=O)CC4)cc3C2=O)C(=O)N1
C40H39ClFN7O5
752.247000
BUPUIXDNVLUSRO-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72261; PubChem:CID174301178
Local ready
Direct docking supported
E3L003418
BDB003418
US20250368640, Example 10
CCc1c[nH]c2ncc(-c3cccc(N4CCCN(CC5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)N(C)C6=O)C7=O)CC5)C4=O)c3)c(Cl)c12
C39H40ClN7O5
722.246000
PXWXIUUXRQTGHA-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72262; PubChem:CID174301180
Local ready
Direct docking supported
E3L003419
BDB003419
US20250368640, Example 11
O=C1CCC(N2Cc3ccc(N4CCC(CN5CCCN(c6cccc(-c7cnc8[nH]cc(C9CC9)c8c7Cl)c6)C5=O)CC4)cc3C2=O)C(=O)N1
C39H40ClN7O4
706.247000
HLHPRHUZHWWUPG-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72263; PubChem:CID174301181
Local ready
Direct docking supported
E3L003420
BDB003420
US20250368640, Example 13
O=C1CCC(N2Cc3ccc(N4CCC(CN5CCCN(c6cccc(-c7cnc8[nH]cc(CC(F)F)c8c7Cl)c6)C5=O)CC4)cc3C2=O)C(=O)N1
C38H38ClF2N7O4
730.216000
MOYSHFTWELMSEG-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM72265; PubChem:CID174301188
Local ready
Direct docking supported