E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L038301
BDB038301
BDBM743988
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(C[C@H]5C[C@H](N6CCN(c7cccc8c7C(=O)N(C7CCC(=O)NC7=O)C8=O)CC6)C5)CC4)ncc3Cl)ccc2n(C(C)C)c1=O
C45H52ClN11O7
894.434000
SABIXZOVPMJGME-LFUVDIOQSA-N P41182 B-cell lymphoma 6 protein
BindingDB
BindingDB:BDBM743988
Local ready
Direct docking supported
E3L038302
BDB038302
US12310975, Example 538
CNC(=O)COc1cc2cc(Nc3nc(N4CCC(CN5CC(N6CCC(c7ccc8c(c7)C(=O)N(C7CCC(=O)NC7=O)C8=O)CC6)C5)CC4)ncc3Cl)ccc2n(C(C)C)c1=O
C46H53ClN10O7
893.446000
GOYKHQXKPBGXEC-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743989; PubChem:CID176370959
Local ready
Direct docking supported
E3L038303
BDB038303
US12310975, Example 539
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CC5CCC6(CC5)CN(c5c(F)ccc7c5C(=O)N(C5CCC(=O)NC5=O)C7=O)C6)CC4)ncc3Cl)ccc2n(C(C)C)c1=O
C45H50ClFN10O7
897.409000
BNHWEKBGJWLLKW-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743990; PubChem:CID176371073
Local ready
Direct docking supported
E3L038304
BDB038304
US12310975, Example 540
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CC5CCC6(CC5)CN(c5cc(F)cc7c5C(=O)N(C5CCC(=O)NC5=O)C7=O)C6)CC4)ncc3Cl)ccc2n(C(C)C)c1=O
C45H50ClFN10O7
897.409000
KFFXKLQEGISMBN-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743991; PubChem:CID156292537
Local ready
Direct docking supported
E3L038305
BDB038305
US12310975, Example 541
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CC5CCC6(CC5)CN(c5ccc(F)c7c5C(=O)N(C5CCC(=O)NC5=O)C7=O)C6)CC4)ncc3Cl)ccc2n(C(C)C)c1=O
C45H50ClFN10O7
897.409000
DDJXLVOVNSAOEG-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743992; PubChem:CID176371067
Local ready
Direct docking supported
E3L038306
BDB038306
BDBM745483
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)cc2F)ncc1N1CCC[C@](N)([C@H](O)C(F)F)C1
C41H41F4N11O6
859.842000
XMTDVVZFYPARAI-ZBQXBNHNSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745483
Local ready
Direct docking supported
E3L038307
BDB038307
BDBM745484
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)cc2F)ncc1N1CCC[C@](N)([C@H](O)C(F)F)C1
C42H43F4N11O6
873.869000
CJROCMNGBXCPQI-RSDVXGCDSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745484
Local ready
Direct docking supported
E3L038308
BDB038308
BDBM745485
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)cc2F)ncc1N1CCC[C@](N)([C@H](O)C(F)F)C1
C43H45F4N11O6
887.896000
SNXGARCJGJSREV-IJYBWQORSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745485
Local ready
Direct docking supported
E3L038309
BDB038309
BDBM745486
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCC(=O)Nc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)cc2F)ncc1N1CCC[C@](N)([C@H](O)C(F)F)C1
C39H35F4N11O7
845.771000
ZHDXQKDFUFNTCY-WUGOITQHSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745486
Local ready
Direct docking supported
E3L038310
BDB038310
BDBM745487
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCC(=O)NCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)cc2F)ncc1N1CCC[C@](N)([C@H](O)C(F)F)C1
C41H40F4N12O7
888.840000
ZCFCOOFFAUPLJX-GKELGUGYSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745487
Local ready
Direct docking supported
E3L038311
BDB038311
BDBM745488
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCC(=O)NCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)cc2F)ncc1N1CCC[C@](N)([C@H](O)C(F)F)C1
C42H42F4N12O7
902.867000
QSHFZCSZAFMRBA-LQCCTFLBSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745488
Local ready
Direct docking supported
E3L038312
BDB038312
BDBM745489
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)c(F)c2)ncc1N1CCC[C@](N)(c2ccccn2)C1
C44H42F2N12O5
856.895000
LNCVBVDBUOVQQE-CDOBHWNYSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745489
Local ready
Direct docking supported
E3L038313
BDB038313
BDBM745490
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)c(F)c2)ncc1N1CCC[C@@](N)(c2ccccn2)C1
C44H42F2N12O5
856.895000
LNCVBVDBUOVQQE-SUESPNGSSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745490
Local ready
Direct docking supported
E3L038314
BDB038314
BDBM745491
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)c(F)c2)ncc1N1CCC[C@](N)(c2ccccn2)C1
C44H42F2N12O5
856.895000
LNCVBVDBUOVQQE-CDOBHWNYSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745491
Local ready
Direct docking supported
E3L038315
BDB038315
BDBM745492
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)c(F)c2)ncc1N1CCC[C@@](N)(c2ccccn2)C1
C45H44F2N12O5
870.922000
LIGMFUAIKXOMQZ-JWERODGISA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745492
Local ready
Direct docking supported
E3L038316
BDB038316
BDBM745493
Nc1ncnc2c1ncn2Cc1cc(-c2cc(F)c(OCCCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)c(F)c2)ncc1N1CCC[C@](N)(c2ccccn2)C1
C46H46F2N12O5
884.949000
OEUOUFSMFNOYNL-WXNBYPKKSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745493
Local ready
Direct docking supported
E3L038317
BDB038317
BDBM745494
COc1cc(F)c(-c2cc(Cn3cnc4c(NCCCCCNc5cccc6c5C(=O)N(C5CCC(=O)NC5=O)C6=O)ncnc43)c(N3CCC[C@](N)([C@H](O)C(F)F)C3)cn2)cc1F
C43H45F4N11O6
887.896000
RKAROYNIWOCUGC-IJYBWQORSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745494
Local ready
Direct docking supported
E3L038318
BDB038318
BDBM745495
COc1cc(F)c(-c2cc(Cn3cnc4c(NCCCCCCNc5cccc6c5C(=O)N(C5CCC(=O)NC5=O)C6=O)ncnc43)c(N3CCC[C@](N)([C@H](O)C(F)F)C3)cn2)cc1F
C44H47F4N11O6
901.923000
KUXASBBVJKSINF-VAZUKEPDSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745495
Local ready
Direct docking supported
E3L038319
BDB038319
BDBM745496
COc1c(F)cc(-c2cc(Cn3cnc4c(NCCCCCCCNc5cccc6c5C(=O)N(C5CCC(=O)NC5=O)C6=O)ncnc43)c(N3CCC[C@](N)(c4ccccn4)C3)cn2)cc1F
C48H50F2N12O5
913.003000
GVGWDQRVDXJKMY-IFGMLOPASA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745496
Local ready
Direct docking supported
E3L038320
BDB038320
BDBM745497
COc1c(F)cc(-c2cc(Cn3cnc4c(NCCCCCCNc5cccc6c5C(=O)N(C5CCC(=O)NC5=O)C6=O)ncnc43)c(N3CCC[C@](N)(c4ccccn4)C3)cn2)cc1F
C47H48F2N12O5
898.976000
ZRUTYQLCNNKFJV-PFTIORHPSA-N O96028 Histone-lysine N-methyltransferase NSD2
BindingDB
BindingDB:BDBM745497
Local ready
Direct docking supported