E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L038761
BDB038761
BDBM747769
Cn1cnnc1-c1cc(C#N)ccc1-c1cc(C2CC2)nc(N2Cc3c(cc(CNCC4(O)CCC4)c(F)c3F)C2=O)c1
C32H29F2N7O2
581.627000
LUOICDDCILGBKD-UHFFFAOYSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM747769; PubChem:CID167421165
Local ready
Direct docking supported
E3L038762
BDB038762
US20250186425, Example 1
CS(=O)(=O)c1ccc(C#N)cc1-c1cc(=O)c2c(Oc3ccc(Cl)cc3)cc(F)cc2[nH]1
C23H14ClFN2O4S
468.893000
UCXQPWJEIRUHMA-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM748283; PubChem:CID169182922
Local ready
Direct docking supported
E3L038763
BDB038763
US20250186425, Example 2
N#Cc1ccc(Cl)c(-c2cc(=O)c3c(Oc4ccc(Cl)cc4)cc(F)cc3[nH]2)c1
C22H11Cl2FN2O2
425.246000
COHHHXMDPRYJHR-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM748284; PubChem:CID169182917
Local ready
Direct docking supported
E3L038764
BDB038764
US20250186425, Example 3
Cn1cc(Oc2cc(F)cc3[nH]c(-c4cc(C#N)ccc4S(C)(=O)=O)cc(=O)c23)cn1
C21H15FN4O4S
438.440000
QRSGCVCSDCNFJD-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM748285; PubChem:CID169182920
Local ready
Direct docking supported
E3L038765
BDB038765
US20250186425, Example 4
Cn1cc(Oc2cc(Cl)cc3[nH]c(-c4cc(C#N)ccc4S(C)(=O)=O)cc(=O)c23)cn1
C21H15ClN4O4S
454.895000
FOPFFFSSLAQOLF-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM748286; PubChem:CID169182927
Local ready
Direct docking supported
E3L038766
BDB038766
US20250186425, Example 2
N#Cc1ccc(Cl)c(-c2cc(=O)c3c(Oc4ccc(Cl)cc4)cc(F)cc3[nH]2)c1
C22H11Cl2FN2O2
425.246000
COHHHXMDPRYJHR-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM748287; PubChem:CID169182917
Local ready
Direct docking supported
E3L038767
BDB038767
US20250186425, Example 6
N#Cc1ccc(Cl)c(-c2cc(=O)c3c(OCc4ccc(Cl)cc4)cc(F)cc3[nH]2)c1
C23H13Cl2FN2O2
439.273000
RMSPJLUETZFQRL-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM748288; PubChem:CID169182914
Local ready
Direct docking supported
E3L038768
BDB038768
US20250186425, Example 7
CS(=O)(=O)c1ccc(C#N)cc1-c1cc(=O)c2c(Cc3ccc(Cl)cc3)cc(F)cc2[nH]1
C24H16ClFN2O3S
466.921000
OAQXIJJAMUQBLZ-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM748289; PubChem:CID169182915
Local ready
Direct docking supported
E3L038769
BDB038769
H-Arg-Tyr(3-NO2)-Phe-NH2
N=C(N)NCCC[C@H](N)C(=O)N[C@@H](Cc1ccc(O)c([N+](=O)[O-])c1)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C24H32N8O6
528.570000
AGLKZPCEXKJXDE-BZSNNMDCSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR1, E3 ubiquitin-protein ligase UBR2
BindingDB, PubChem
BindingDB:BDBM748293; PubChem:CID176780166
Local ready
Direct docking supported
E3L038770
BDB038770
H-Phe(4-guanidino)-Ile-Phe-NH2
CC[C@H](C)[C@H](NC(=O)[C@@H](N)Cc1ccc(N=C(N)N)cc1)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C25H35N7O3
481.601000
HIWLTVZFXFKVJT-ZEWNOJEFSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR1, E3 ubiquitin-protein ligase UBR2
BindingDB, PubChem
BindingDB:BDBM748295; PubChem:CID176780169
Local ready
Direct docking supported
E3L038771
BDB038771
H-Hse(guanidino)(guanidino)-Ile-Phe-NH2
CC[C@H](C)[C@H](NC(=O)[C@@H](N)CCONC(=N)N)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C20H33N7O4
435.529000
MNEIZXBKPOUWNF-TUUVXOQKSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR2, E3 ubiquitin-protein ligase UBR1
BindingDB, PubChem
BindingDB:BDBM748296; PubChem:CID170209468
Local ready
Direct docking supported
E3L038772
BDB038772
H-Arg(CH2CF3)(CH2CF3)-Ile-Phe-NH2
CC[C@H](C)[C@H](NC(=O)[C@@H](N)CCCNC(=N)NCC(F)(F)F)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C23H36F3N7O3
515.581000
UUKKHWCHKBIPJL-DKIMLUQUSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR2, E3 ubiquitin-protein ligase UBR1
BindingDB, PubChem
BindingDB:BDBM748297; PubChem:CID176780168
Local ready
Direct docking supported
E3L038773
BDB038773
H-Phe(4-ureido)-Ile-Phe-NH2
CC[C@H](C)[C@H](NC(=O)[C@@H](N)Cc1ccc(NC(N)=O)cc1)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C25H34N6O4
482.585000
DOJQUDMNFNOJOJ-ZEWNOJEFSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR2, E3 ubiquitin-protein ligase UBR1
BindingDB, PubChem
BindingDB:BDBM748317; PubChem:CID170209509
Local ready
Direct docking supported
E3L038774
BDB038774
BDBM748318
CC[C@H](C)[C@H](NC(=O)[C@@H](N)CCCN(C)C(=N)NC)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C23H39N7O3
461.611000
UDLUCXXDMNZXIR-WNHJNPCNSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR1, E3 ubiquitin-protein ligase UBR2
BindingDB, PubChem
BindingDB:BDBM748318; PubChem:CID169180630
Local ready
Direct docking supported
E3L038775
BDB038775
BDBM748319
CNC(=N)N(C)CCC[C@H](N)C(=O)N[C@@H](Cc1ccc(O)c(C)c1)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C27H39N7O4
525.654000
JQFXHNCNTRJSLJ-FKBYEOEOSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR2, E3 ubiquitin-protein ligase UBR1
BindingDB
BindingDB:BDBM748319
Local ready
Direct docking supported
E3L038776
BDB038776
H-Ala(tetrazol-5-yl)(tetrazol-5-yl)-Ile-Phe-NH2
CC[C@H](C)[C@H](NC(=O)[C@@H](N)Cc1nn[nH]n1)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C19H28N8O3
416.486000
JZTNCYDQLJQSTF-PCBIJLKTSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR1, E3 ubiquitin-protein ligase UBR2
BindingDB, PubChem
BindingDB:BDBM748320; PubChem:CID176780157
Local ready
Direct docking supported
E3L038777
BDB038777
BDBM748321
CCNC(=N)N(CC)CCC[C@H](N)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(N)=O)[C@@H](C)CC
C25H43N7O3
489.665000
RVZUFLPPLHZCLF-VMXMFDLUSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR2, E3 ubiquitin-protein ligase UBR1
BindingDB, PubChem
BindingDB:BDBM748321; PubChem:CID176780160
Local ready
Direct docking supported
E3L038778
BDB038778
H-His(3-Me)-Ile-Phe-NH2
CC[C@H](C)[C@H](NC(=O)[C@@H](N)Cc1cncn1C)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C22H32N6O3
428.537000
JHXXWGIIIOPKRM-QZHFEQFPSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR1, E3 ubiquitin-protein ligase UBR2
BindingDB, PubChem
BindingDB:BDBM748322; PubChem:CID176780158
Local ready
Direct docking supported
E3L038779
BDB038779
BDBM748323
CNC(=N)N(C)CCC[C@H](N)C(=O)N[C@@H](Cc1ccc(O)c([N+](=O)[O-])c1)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C26H36N8O6
556.624000
HQNHXIGICJGILA-UFYCRDLUSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR2, E3 ubiquitin-protein ligase UBR1
BindingDB
BindingDB:BDBM748323
Local ready
Direct docking supported
E3L038780
BDB038780
BDBM748324
CNC(=N)N(C)CCC[C@H](N)C(=O)N[C@@H](Cc1ccc(O)c([N+](=O)[O-])c1)C(=O)N[C@@H](Cc1ccccc1)C(N)=O
C26H36N8O6
556.624000
HQNHXIGICJGILA-UFYCRDLUSA-N Q8IWV7, Q8IWV8 E3 ubiquitin-protein ligase UBR2, E3 ubiquitin-protein ligase UBR1
BindingDB
BindingDB:BDBM748324
Local ready
Direct docking supported