E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L048041
BDB048041
BDBM50194252
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCN(C(C)=O)C1CC2CCC1C2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C46H65N7O10
876.065000
STNKZTAUFWFKBE-YCIFDCPOSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194252
Local ready
Direct docking supported
E3L048042
BDB048042
BDBM50194253
[C]OC(=O)[C@H]([C][O])[N]C(=O)[C@H]([C][C][C][C][N]C(N([C])[C])=[N+]([C])[C])[N]C(=O)[C@H]([C][C]([C])[C])[N]C(=O)[C@H]([C])[N]C(=O)[C@H]([C]c1ccccc1)[N]C(=O)[C][N]C(=O)c1ccccc1
C42H15N9O9+
789.636000
DNOLUTCZBMOMFQ-KMACTHOASA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194253
Local ready
Direct docking supported
E3L048043
BDB048043
BDBM50194254
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCNC1CN2CCC1CC2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C44H64N8O9
849.043000
DFYGXOYGRGSTSI-JQVWEZKJSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194254
Local ready
Direct docking supported
E3L048044
BDB048044
Bz-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccccc1)C(=O)N[C@@H](CO)C(=O)OC
C39H58N6O8
738.927000
HYDGXWBSEOPRIN-FRJISQSVSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194255; PubChem:CID134149263
Local ready
Direct docking supported
E3L048045
BDB048045
Bz(3-Me)-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1cccc(C)c1)C(=O)N[C@@H](CO)C(=O)OC
C40H60N6O8
752.954000
LBRBNTUYIBYDIR-KMACTHOASA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194256; PubChem:CID134146658
Local ready
Direct docking supported
E3L048046
BDB048046
Bz(4-Me)-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C)cc1)C(=O)N[C@@H](CO)C(=O)OC
C40H60N6O8
752.954000
VCAQDGBJOWAITH-KMACTHOASA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194257; PubChem:CID134141602
Local ready
Direct docking supported
E3L048047
BDB048047
BDBM50194258
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)C)cc1)C(=O)N[C@@H](CO)C(=O)OC
C42H64N6O8
781.008000
ROYGCJFTRGCLIU-JCXBGQGISA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194258
Local ready
Direct docking supported
E3L048048
BDB048048
Unc3866
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)(C)C)cc1)C(=O)N[C@@H](CO)C(=O)OC
C43H66N6O8
795.035000
UMRRDXVUROEIKJ-JCXBGQGISA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194259; PubChem:CID101043861
Local ready
Direct docking supported
E3L048049
BDB048049
Bz(4-CF3)-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(F)(F)F)cc1)C(=O)N[C@@H](CO)C(=O)OC
C40H57F3N6O8
806.924000
YKZYTGMDKIVZKB-NKZKHMIMSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194260; PubChem:CID134153154
Local ready
Direct docking supported
E3L048050
BDB048050
deamino-Phg(4-tBu)-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)Cc1ccc(C(C)(C)C)cc1)C(=O)N[C@@H](CO)C(=O)OC
C44H68N6O8
809.062000
WQWSPBKHYFCYOG-OKCLBPDBSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194261; PubChem:CID134154083
Local ready
Direct docking supported
E3L048051
BDB048051
deamino-nTrp-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)Cc1c[nH]c2ccccc12)C(=O)N[C@@H](CO)C(=O)OC
C42H61N7O8
791.991000
WHANHEKCAHJBNW-KCAPAQDDSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194262; PubChem:CID134148174
Local ready
Direct docking supported
E3L048052
BDB048052
Bz-Gly-Phe-Ala-Leu-Lys(Me3)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C40H60N7O9+
782.960000
UKJWSRUUPHPDEX-FRJISQSVSA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194263; PubChem:CID134153698
Local ready
Direct docking supported
E3L048053
BDB048053
Bz-Gly-Phe-N(Me)Ala-Leu-Lys(Me3)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)N(C)C(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C41H62N7O9+
796.987000
SEXSTVHQRKRUNM-KMACTHOASA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194356; PubChem:CID134145156
Local ready
Direct docking supported
E3L048054
BDB048054
Bz-Gly-N(Me)Phe-Ala-Leu-Lys(Me3)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)N(C)C(=O)CNC(=O)c1ccccc1
C41H62N7O9+
796.987000
INFJDHQAVTWBET-KMACTHOASA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194386; PubChem:CID134151685
Local ready
Direct docking supported
E3L048055
BDB048055
Bz-Sar-Phe-Ala-Leu-Lys(Me3)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CN(C)C(=O)c1ccccc1
C41H62N7O9+
796.987000
ZWZLJLNERXZIRR-KMACTHOASA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194387; PubChem:CID134156240
Local ready
Direct docking supported
E3L048056
BDB048056
Bz-Gly-Phe-Ala-Leu-Lys(iPr)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCNC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C40H59N7O9
781.952000
GRGNHDGOUCOENS-FRJISQSVSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194388; PubChem:CID134152824
Local ready
Direct docking supported
E3L048057
BDB048057
Bz-Gly-Phe-Ala-Leu-Lys(cHex)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCNC1CCCCC1)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C43H63N7O9
822.017000
UJGOCBZRZNGGDO-JCXBGQGISA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194426; PubChem:CID134134706
Local ready
Direct docking supported
E3L048058
BDB048058
BDBM50194427
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCNC1CC2CCC1C2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C44H63N7O9
834.028000
KIVRLNZVHYCJSN-CEIAAXPSSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194427
Local ready
Direct docking supported
E3L048059
BDB048059
Bz-Gly-Phe-Ala-Leu-Lys(Me2)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCN(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C39H57N7O9
767.925000
PJWSTQJTRDBBIU-LJEIBCANSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194431; PubChem:CID134144237
Local ready
Direct docking supported
E3L048060
BDB048060
BDBM50194447
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)Cc1ccc2ccccc2c1)C(=O)N[C@@H](CO)C(=O)OC
C44H62N6O8
803.014000
OUNRVROJVYUGOT-WULLJDQYSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194447
Local ready
Direct docking supported