E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L048061
BDB048061
BDBM50194448
CCCN(CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)(C)C)cc1)C(=O)N[C@@H](CO)C(=O)OC)C(C)C
C45H70N6O8
823.089000
ITTGNAWNEDCTNG-DUKNTCSXSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194448
Local ready
Direct docking supported
E3L048062
BDB048062
Bz(4-tBu)-Phe-Val-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)(C)C)cc1)C(C)C)C(=O)N[C@@H](CO)C(=O)OC
C45H70N6O8
823.089000
ZXFIEZQGWQBWCD-LQWITFIISA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194449; PubChem:CID134134858
Local ready
Direct docking supported
E3L048063
BDB048063
Bz(4-tBu)-Phe-Ala-Leu-Lys(Et2)-Ser-OH
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)(C)C)cc1)C(=O)N[C@@H](CO)C(=O)O
C42H64N6O8
781.008000
PBCHJNMDDNVDMG-HCJIVJCNSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194450; PubChem:CID102602634
Local ready
Direct docking supported
E3L048064
BDB048064
Bz(4-tBu)-Phe-Ala-Leu-Lys(Et2)-Gly-ol
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)(C)C)cc1)C(=O)NCCO
C41H64N6O6
736.999000
AEXWIZIRHCUOMT-HNJBERQJSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194457; PubChem:CID134154055
Local ready
Direct docking supported
E3L048065
BDB048065
Bz(4-tBu)-Phe(4-MeNH2)-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccc(CN)cc1)NC(=O)c1ccc(C(C)(C)C)cc1)C(=O)N[C@@H](CO)C(=O)OC
C44H69N7O8
824.077000
IQFBELGVMQWYDI-FETRQNOVSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194458; PubChem:CID134156251
Local ready
Direct docking supported
E3L048066
BDB048066
Bz-Gly-Phe-Ala-Leu-Lys-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C37H53N7O9
739.871000
SSBGKJYMHDNYHV-QALZTRBASA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194459; PubChem:CID134142297
Local ready
Direct docking supported
E3L048067
BDB048067
Bz-Ala-Leu-Lys(Me3)-NHMe
CNC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)c1ccccc1
C26H44N5O4+
490.669000
TXRQVSMPFCHELS-BVSLBCMMSA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194460; PubChem:CID134145736
Local ready
Direct docking supported
E3L048068
BDB048068
Bz(4-tBu)-Phe-Abu-Leu-Lys(Et2)-Ser-OMe
CC[C@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)(C)C)cc1)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN(CC)CC)C(=O)N[C@@H](CO)C(=O)OC
C44H68N6O8
809.062000
YUNDLGQJZQUDNB-LTLCPEALSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194462; PubChem:CID134133875
Local ready
Direct docking supported
E3L048069
BDB048069
Bz-Gly-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1)C(=O)N[C@@H](CO)C(=O)OC
C41H61N7O9
795.979000
LVLHGUOJFJEUQP-KMACTHOASA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194463; PubChem:CID102602632
Local ready
Direct docking supported
E3L048070
BDB048070
BDBM50194464
CC(C)C[C@H](NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccccc1)C(=O)NCCCCC[N+](C)(C)C
C33H50N5O4+
580.794000
FCUVIHIUNUOUJE-FMYROPPKSA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194464; PubChem:CID134133965
Local ready
Direct docking supported
E3L048071
BDB048071
Bz-Phe-Ala-Leu-Lys(Me3)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccccc1
C38H57N6O8+
725.908000
KWZNJTOCNMNMAZ-LJEIBCANSA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194465; PubChem:CID134157612
Local ready
Direct docking supported
E3L048072
BDB048072
Bz(4-tBu)-Phe-Ala-Leu-Lys(Me3)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(C)(C)C)cc1
C42H65N6O8+
782.016000
VWQADHAJYDYFRH-HCJIVJCNSA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194466; PubChem:CID134155339
Local ready
Direct docking supported
E3L048073
BDB048073
BDBM50194467
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCN(C)C1CNC1)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C41H60N8O9
808.978000
BIMYZGLGQWJLIM-YNUAGZMFSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194467
Local ready
Direct docking supported
E3L048074
BDB048074
Bz-Gly-Phe-Ala-Leu-Nle(piperidino)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCN1CCCCC1)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C42H61N7O9
807.990000
YMGXCYQJAWUXNG-VYKSXFOXSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194468; PubChem:CID134149994
Local ready
Direct docking supported
E3L048075
BDB048075
Bz(4-OMe)-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(OC)cc1)C(=O)N[C@@H](CO)C(=O)OC
C40H60N6O9
768.953000
VXBVPENBQFGYRJ-YNUAGZMFSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194469; PubChem:CID134149299
Local ready
Direct docking supported
E3L048076
BDB048076
BDBM50194470
COC(=O)[C@H](CO)NC(=O)[C@H](CCCCNC1C2CC3CC(C2)CC1C3)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)c1ccccc1
C47H67N7O9
874.093000
UCRSNRWWVDEHLO-JXGGDCLASA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194470
Local ready
Direct docking supported
E3L048077
BDB048077
BDBM50194471
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccc(C(=O)OC)cc1)C(=O)N[C@@H](CO)C(=O)OC
C41H60N6O10
796.963000
ZEQPUKRMOYRHJH-YNUAGZMFSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194471
Local ready
Direct docking supported
E3L048078
BDB048078
Bz-Ala-Leu-Lys(Me3)-Ser-OMe
COC(=O)[C@H](CO)NC(=O)[C@H](CCCC[N+](C)(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)c1ccccc1
C29H48N5O7+
578.731000
CYGWLCBRYLFZSB-BIHRQFPBSA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194472; PubChem:CID134151077
Local ready
Direct docking supported
E3L048079
BDB048079
Bz(2-Me)-Phe-Ala-Leu-Lys(Et2)-Ser-OMe
CCN(CC)CCCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1ccccc1C)C(=O)N[C@@H](CO)C(=O)OC
C40H60N6O8
752.954000
HQOYGLASHKRVBV-KMACTHOASA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50194473; PubChem:CID134143576
Local ready
Direct docking supported
E3L048080
BDB048080
BDBM50194474
CCc1ccc(C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN(CC)CC)C(=O)N[C@@H](CO)C(=O)OC)cc1
C41H62N6O8
766.981000
SOGNIQLFQOQYGJ-HCJIVJCNSA-N O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50194474
Local ready
Direct docking supported