E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L050521
BDB050521
BDBM50269857
CC(=O)N1CCC(n2nc(N3CCCc4cc(-c5cnn(C)c5)c(C(F)F)cc43)c3c2CCN(C(C)=O)C3)CC1
C29H35F2N7O2
551.642000
QUBRQSUHVSGWCC-UHFFFAOYSA-N Q92793 CREB-binding protein
BindingDB
BindingDB:BDBM50269857
Local ready
Direct docking supported
E3L050522
BDB050522
BDBM50269906
CC(=O)N1CCc2c(c(N3CCCc4cc(-c5cnn(C)c5)c(C(F)F)cc43)nn2C2CCN(C)CC2)C1
C28H35F2N7O
523.632000
XJBFFRZIFUFSCO-UHFFFAOYSA-N Q92793 CREB-binding protein
BindingDB
BindingDB:BDBM50269906
Local ready
Direct docking supported
E3L050523
BDB050523
BDBM50269907
CC(=O)N1CCc2c(c(N3CCCc4cc(-c5cnn(C)c5)c(C(F)F)cc43)nn2C2CCNCC2)C1
C27H33F2N7O
509.605000
LHZXBZYVTILAIU-UHFFFAOYSA-N Q92793 CREB-binding protein
BindingDB
BindingDB:BDBM50269907
Local ready
Direct docking supported
E3L050524
BDB050524
BDBM50269908
CC(=O)N1CCc2c(c(N3CCCc4cc(-c5cnn(C)c5)c(C(F)F)cc43)nn2C2CCCCC2)C1
C28H34F2N6O
508.617000
JOYSTGRIDZTHNY-UHFFFAOYSA-N Q92793 CREB-binding protein
BindingDB, PubChem
BindingDB:BDBM50269908; PubChem:CID121373769
Local ready
Direct docking supported
E3L050525
BDB050525
BDBM50269909
CC(=O)N1CCc2c(c(N3CCCc4cc(-c5cnn(C)c5)c(Cl)cc43)nn2[C@H]2CCOC2)C1
C25H29ClN6O2
481.000000
NYOUQHHVBLJFPS-IBGZPJMESA-N Q92793 CREB-binding protein
BindingDB
BindingDB:BDBM50269909
Local ready
Direct docking supported
E3L050526
BDB050526
BDBM50269910
CC(=O)N1CCc2c(c(N3CCCCc4cc(-c5cnn(C)c5)ccc43)nn2[C@H]2CCOC2)C1
C26H32N6O2
460.582000
BTSWVMKKTISTTJ-QFIPXVFZSA-N Q92793 CREB-binding protein
BindingDB, PubChem
BindingDB:BDBM50269910; PubChem:CID121373476
Local ready
Direct docking supported
E3L050527
BDB050527
BDBM50269911
CC(=O)N1CCc2c(c(N3CCc4cc(-c5cnn(C)c5)ccc43)nn2[C@H]2CCOC2)C1
C24H28N6O2
432.528000
RYJWPUXSUMMTIQ-FQEVSTJZSA-N Q92793 CREB-binding protein
BindingDB, PubChem
BindingDB:BDBM50269911; PubChem:CID121376818
Local ready
Direct docking supported
E3L050528
BDB050528
BDBM50269912
CN(C)C(=O)N1CCc2c(c(N3CCCc4cc(-c5cnn(C)c5)c(C(F)F)cc43)nn2C2CCOCC2)C1
C28H35F2N7O2
539.631000
JJYJXZODNWHHKA-UHFFFAOYSA-N Q92793 CREB-binding protein
BindingDB, PubChem
BindingDB:BDBM50269912; PubChem:CID137656667
Local ready
Direct docking supported
E3L050529
BDB050529
BDBM50269914
CC(=O)N1CCc2c(c(N3CCCc4cc(-c5cnn(C)c5)c(C(F)(F)F)cc43)nn2[C@H]2CCOC2)C1
C26H29F3N6O2
514.552000
BPGFXHXXEIUDSE-IBGZPJMESA-N Q92793 CREB-binding protein
BindingDB, PubChem
BindingDB:BDBM50269914; PubChem:CID137646519
Local ready
Direct docking supported
E3L050530
BDB050530
PF-573228
CS(=O)(=O)c1cccc(CNc2nc(Nc3ccc4c(c3)CCC(=O)N4)ncc2C(F)(F)F)c1
C22H20F3N5O3S
491.495000
HESLKTSGTIBHJU-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM50269948; PubChem:CID11612883
Local ready
Direct docking supported
E3L050531
BDB050531
BDBM50270475
CCCCc1oc2ccccc2c1C(=O)c1ccc(OCCCN)cc1
C22H25NO3
351.446000
XWSGOHFMQOHBJK-UHFFFAOYSA-N O75151, P29375, Q6ZMT4 Lysine-specific demethylase 7A, Lysine-specific demethylase 5A, Lysine-specific demethylase PHF2
BindingDB, PubChem
BindingDB:BDBM50270475; PubChem:CID145963156
Local ready
Direct docking supported
E3L050532
BDB050532
BDBM50270476
CC(C)C[C@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@@H]1CCCN1C(=O)[C@H](C)NC(=O)[C@H](CCCCN)NC(=O)CNC(=O)CNC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCCCN(C)C)NC(=O)[C@@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)N)[C@@H](C)O)[C@@H](C)O)[C@@H](C)O)C(=O)N[C@@H](C)C(=O)O
C96H176N36O28
2282.688000
HAEAINLTRBJDIK-PCXPZXRNSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50270476; PubChem:CID131637453
Local ready
Direct docking supported
E3L050533
BDB050533
BDBM50270477
CNCCCC[C@H](NC(=O)[C@@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)N)[C@@H](C)O)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)NCC(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)O)[C@@H](C)O)[C@@H](C)O
C95H174N36O28
2268.661000
WKQOZLPRRKXRCK-IJXLUJRRSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50270477; PubChem:CID145962144
Local ready
Direct docking supported
E3L050534
BDB050534
Histone H3 (1-21)
CC(C)C[C@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@@H]1CCCN1C(=O)[C@H](C)NC(=O)[C@H](CCCCN)NC(=O)CNC(=O)CNC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)N)[C@@H](C)O)[C@@H](C)O)[C@@H](C)O)C(=O)N[C@@H](C)C(=O)O
C94H172N36O28
2254.634000
OJIDDTQPKBXBPY-LSFKTUMCSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50270478; PubChem:CID56666474
Local ready
Direct docking supported
E3L050535
BDB050535
BDBM50270479
CCCCc1oc2ccccc2c1C(=O)c1ccccc1OCCC[N+](C)(C)C
C25H32NO3+
394.535000
MUZHQXLLSAFYCM-UHFFFAOYSA-N O75151, P29375, Q6ZMT4 Lysine-specific demethylase 5A, Lysine-specific demethylase PHF2, Lysine-specific demethylase 7A
BindingDB, PubChem
BindingDB:BDBM50270479; PubChem:CID145947236
Local ready
Direct docking supported
E3L050536
BDB050536
4-chloro-6,7-dimethoxy-9H-pyrimido[4,5-b]indole
COc1cc2[nH]c3ncnc(Cl)c3c2cc1OC
C12H10ClN3O2
263.684000
DJEHYLVMWCPRFJ-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM50270610; PubChem:CID14293776
Local ready
Direct docking supported
E3L050537
BDB050537
BDBM50270611
COc1cc2[nH]c3ncnc(N4CCN(C(=S)Nc5ccc(S(=O)(=O)Nc6ncccn6)cc5)CC4)c3c2cc1OC
C27H27N9O4S2
605.706000
URSWGFSZIPXVPM-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM50270611; PubChem:CID11353953
Local ready
Direct docking supported
E3L050538
BDB050538
15-Deoxy-delta12,14-prostaglandin
CCCCC/C=C/C=C1/C(=O)C=C[C@@H]1C/C=C\CCCC(=O)O
C20H28O3
316.441000
VHRUMKCAEVRUBK-GODQJPCRSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50270612; PubChem:CID5311211
Local ready
Direct docking supported
E3L050539
BDB050539
BDBM50271098
CC(=O)C1=C(O)C(=O)N(CCc2ccc(Cl)c(Cl)c2)C1c1ccc(Br)cc1
C20H16BrCl2NO3
469.162000
WHVAGTFDMKXLRY-UHFFFAOYSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM50271098; PubChem:CID46830074
Local ready
Direct docking supported
E3L050540
BDB050540
BDBM50271299
CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCc2ccccc21)[C@@H](C)CC
C37H49N5O4
627.830000
JSAPFBCRNWYBJJ-UCARXCGCSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM50271299; PubChem:CID145960656
Local ready
Direct docking supported