E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L056121
BDB056121
BDBM50436712
CN(C)CCOc1cccc(-c2cc3c(NCCc4ccc(NC(=O)Nc5ccccc5)cc4)ncnc3o2)c1
C31H32N6O3
536.636000
VQLNOPOZCKAEHI-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB, PubChem
BindingDB:BDBM50436712; PubChem:CID57946607
Local ready
Direct docking supported
E3L056122
BDB056122
Ceritinib
Cc1cc(Nc2ncc(Cl)c(Nc3ccccc3S(=O)(=O)C(C)C)n2)c(OC(C)C)cc1C1CCNCC1
C28H36ClN5O3S
558.148000
VERWOWGGCGHDQE-UHFFFAOYSA-N Q9HC35 ALK tyrosine kinase receptor
BindingDB, PubChem
BindingDB:BDBM50436850; PubChem:CID57379345
Local ready
Direct docking supported
E3L056123
BDB056123
BDBM50436874
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H]1CCCc2ccccc21)C(C)C
C22H34N4O3
402.539000
NKTMPLCHKZQWOG-SAKMYQHLSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436874; PubChem:CID71713794
Local ready
Direct docking supported
E3L056124
BDB056124
BDBM50436875
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCCNC(=O)OCc1ccccc1)C(=O)N[C@@H]1CCCc2ccccc21)C(C)C
C33H47N5O5
593.769000
OVEYZHGFBIYALJ-GXBVYBDKSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436875; PubChem:CID71713797
Local ready
Direct docking supported
E3L056125
BDB056125
BDBM50436877
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCNC(=O)OCc1ccccc1)C(=O)N[C@@H]1CCCc2ccccc21)C(C)C
C32H45N5O5
579.742000
LAEIPUYJNBHTFF-QTMWPNOBSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436877; PubChem:CID71713956
Local ready
Direct docking supported
E3L056126
BDB056126
BDBM50436878
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCNC(N)=N[N+](=O)[O-])C(=O)N[C@@H]1CCCc2ccccc21)C(C)C
C25H40N8O5
532.646000
VCKNDEAQNFVJQO-CZGNIMDHSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB
BindingDB:BDBM50436878
Local ready
Direct docking supported
E3L056127
BDB056127
BDBM50436879
CC(C)[C@H](NC(=O)[C@@H](N)CO)C(=O)N[C@@H](C)C(=O)Nc1cccc2ccccc12
C21H28N4O4
400.479000
ODQVNQDIPJQJSW-OWQGQXMQSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436879; PubChem:CID49789910
Local ready
Direct docking supported
E3L056128
BDB056128
BDBM50436882
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H]1CCCc2ccccc21)C(C)C
C22H34N4O4
418.538000
XIIRQXDXNSJBAV-VLQPXKRTSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436882; PubChem:CID71713955
Local ready
Direct docking supported
E3L056129
BDB056129
BDBM50436883
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H]1CCCc2ccccc21)C(C)C
C24H37N5O4
459.591000
AVJWVEBDWRDTMQ-FCBIJRMHSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436883; PubChem:CID71713796
Local ready
Direct docking supported
E3L056130
BDB056130
BDBM50436889
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCNC(N)=N[N+](=O)[O-])C(=O)NNc1ccccc1)C(C)C
C21H35N9O5
493.569000
NUANDDLZGWEIRT-XIRDDKMYSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436889; PubChem:CID71713957
Local ready
Direct docking supported
E3L056131
BDB056131
BDBM50436890
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCN)C(=O)N[C@@H]1CCCc2ccccc21)C(C)C
C24H39N5O3
445.608000
WDMKUTLEJONAPH-CZGNIMDHSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436890; PubChem:CID71713798
Local ready
Direct docking supported
E3L056132
BDB056132
BDBM50436897
CN[C@@H](C)C(=O)N[C@H](C(=O)N[C@H](C(=O)NNc1ccccc1)[C@@H](C)O)C(C)C
C19H31N5O4
393.488000
YOBWRFPWSISANW-XRGAULLZSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM50436897; PubChem:CID71714106
Local ready
Direct docking supported
E3L056133
BDB056133
BDBM50436898
[C][N][C@@H]([C])C(=O)[N][C@@H]([C]([C])[C])C(=O)[N][C@@H]([C][C][C]N=C([N])[N])C(=O)[N][N]c1ccccc1
C21H8N8O3
420.348000
NJUZJYVAKLYGQG-XIRDDKMYSA-N P98170 E3 ubiquitin-protein ligase XIAP
BindingDB
BindingDB:BDBM50436898
Local ready
Direct docking supported
E3L056134
BDB056134
BDBM50437207
CC(C)(C)C[C@@H]1N[C@@H](C(=O)Nc2ccc(C(=O)O)cc2F)[C@H](c2cccc(Cl)c2F)[C@@]1(C#N)c1ccc(Cl)cc1F
C30H26Cl2F3N3O3
604.456000
ZBFIMRGNCSUEQT-FQFMIMTMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50437207; PubChem:CID53358688
Local ready
Direct docking supported
E3L056135
BDB056135
BDBM50437208
CC(C)(C)C[C@@H]1N[C@@H](C(=O)Nc2ccc(C(=O)O)c(F)c2)[C@H](c2cccc(Cl)c2F)[C@@]1(C#N)c1ccc(Cl)cc1F
C30H26Cl2F3N3O3
604.456000
FHYGQTXLSUSDHS-FQFMIMTMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50437208
Local ready
Direct docking supported
E3L056136
BDB056136
BDBM50437209
COc1cc(NC(=O)[C@@H]2N[C@@H](CC(C)(C)C)[C@](C#N)(c3ccc(Cl)cc3F)[C@H]2c2cccc(Cl)c2F)ccc1C(=O)O
C31H29Cl2F2N3O4
616.492000
QFSQODXTNHWKSL-LJQIRTBHSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50437209; PubChem:CID59249270
Local ready
Direct docking supported
E3L056137
BDB056137
BDBM50437210
CC(C)(C)C[C@@H]1N[C@@H](C(=O)Nc2ccc3cc(C(=O)O)ccc3c2)[C@H](c2cccc(Cl)c2F)[C@@]1(C#N)c1ccc(Cl)cc1F
C34H29Cl2F2N3O3
636.526000
UMMYJMRFNJKFMP-QGHWIGIDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50437210; PubChem:CID59249677
Local ready
Direct docking supported
E3L056138
BDB056138
BDBM50437211
CC(C)(C)C[C@@H]1N[C@@H](C(=O)Nc2ccc(C(=O)O)cn2)[C@H](c2cccc(Cl)c2F)[C@@]1(C#N)c1ccc(Cl)cc1F
C29H26Cl2F2N4O3
587.454000
KCLGOJLRKLTZEP-PSAGRBGJSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50437211; PubChem:CID53358566
Local ready
Direct docking supported
E3L056139
BDB056139
BDBM50437212
CC(C)(C)C[C@@H]1N[C@@H](C(=O)Nc2ccc(C(=O)O)cc2)[C@H](c2cccc(Cl)c2F)[C@@]1(C#N)c1ccc(Cl)cc1F
C30H27Cl2F2N3O3
586.466000
MEPKPTIQIKKNNL-FQFMIMTMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50437212; PubChem:CID45139217
Local ready
Direct docking supported
E3L056140
BDB056140
BDBM50437213
CC(C)(C)C[C@@H]1N[C@@H](C(=O)Nc2cccc(C(=O)O)c2)[C@H](c2cccc(Cl)c2F)[C@@]1(C#N)c1ccc(Cl)cc1F
C30H27Cl2F2N3O3
586.466000
PNBCSWDIOOLREF-FQFMIMTMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50437213; PubChem:CID59249253
Local ready
Direct docking supported