E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L062401
BDB062401
BDBM50601522
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)CCCCCNC(=O)c2ccc(-c3ccc(N4CCN(C)CC4)c(NC(=O)c4c[nH]c(=O)cc4C(F)(F)F)c3)cc2)C(C)(C)C)cc1
C53H62F3N9O7S
1026.196000
UPLJFUHLGRAYID-MXPJCAPISA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601522
Local ready
Direct docking supported
E3L062402
BDB062402
BDBM50601523
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)CCCCCCNC(=O)c2ccc(-c3ccc(N4CCN(C)CC4)c(NC(=O)c4c[nH]c(=O)cc4C(F)(F)F)c3)cc2)C(C)(C)C)cc1
C54H64F3N9O7S
1040.223000
BXKFHYMDHAHJSX-UOHLUGTHSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601523
Local ready
Direct docking supported
E3L062403
BDB062403
BDBM50601524
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)Cc2ccc(CNC(=O)c3ccc(-c4ccc(N5CCN(C)CC5)c(NC(=O)c5c[nH]c(=O)cc5C(F)(F)F)c4)cc3)cc2)C(C)(C)C)cc1
C56H60F3N9O7S
1060.213000
PJYZWCPLYVFKHH-PNWJTEEHSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601524
Local ready
Direct docking supported
E3L062404
BDB062404
BDBM50601525
COc1ccc(-c2cn3c(n2)CCC3)cc1CNC(=O)Cc1ccc(Cl)c(Cl)c1
C22H21Cl2N3O2
430.335000
VZEIIDRXHZLNCH-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM50601525; PubChem:CID168278610
Local ready
Direct docking supported
E3L062405
BDB062405
BDBM50601526
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)CCOCCOCCOc2ccc(-c3cn4c(n3)CCC4)cc2CNC(=O)Cc2ccc(Cl)c(Cl)c2)C(C)(C)C)cc1
C50H59Cl2N7O8S
989.036000
KUOHKJIOVPXKOP-AWWHSMTCSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601526
Local ready
Direct docking supported
E3L062406
BDB062406
BDBM50601527
CN1CCN(c2ccc(-c3ccc(C(=O)NCCOCCOCCOCCNc4cccc5c4C(=O)N(C4CCC(=O)NC4=O)C5=O)cc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C46H49F3N8O10
930.938000
MPVUSWCQRFACNA-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601527
Local ready
Direct docking supported
E3L062407
BDB062407
BDBM50601528
CN1CCN(c2ccc(-c3ccc(C(=O)NCCOCCOCCOCCOCCOCCNc4cccc5c4C(=O)N(C4CCC(=O)NC4=O)C5=O)cc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C50H57F3N8O12
1019.044000
DHDXVQJEEHRETI-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601528
Local ready
Direct docking supported
E3L062408
BDB062408
BDBM50601529
CN1CCN(c2ccc(-c3ccc(C(=O)NCCOCCOCCOCCOCCOCCOCCOCCNc4cccc5c4C(=O)N(C4CCC(=O)NC4=O)C5=O)cc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C54H65F3N8O14
1107.150000
OPZUCPBYLOKUIE-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601529
Local ready
Direct docking supported
E3L062409
BDB062409
BDBM50601530
CN1CCN(c2ccc(-c3ccc(C(=O)NCc4ccc(CNc5ccc6c(c5)C(=O)N(C5CCC(=O)NC5=O)C6=O)cc4)cc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C46H41F3N8O7
874.877000
PXGLQUOVJRNPQL-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601530
Local ready
Direct docking supported
E3L062410
BDB062410
BDBM50601531
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)CCOCCOCCOCCOCCNC(=O)c2ccc(-c3ccc(N4CCN(C)C(NC(=O)c5c[nH]c(=O)cc5C(F)(F)F)C4)cc3)cc2)C(C)(C)C)cc1
C58H72F3N9O11S
1160.327000
ACMVOJXLOLDHDX-XTVHMVLRSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601531
Local ready
Direct docking supported
E3L062411
BDB062411
BDBM50601532
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)c2ccc(-c3ccc(N4CCN(C)CC4)c(NC(=O)c4c[nH]c(=O)cc4C(F)(F)F)c3)cc2)C(C)(C)C)cc1
C47H51F3N8O6S
913.036000
QAANVDJLUGLPQA-OEFLFKSQSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601532
Local ready
Direct docking supported
E3L062412
BDB062412
BDBM50601533
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)CCOCCOCCNC(=O)c2ccc(-c3ccc(N4CCN(C)CC4)c(NC(=O)c4c[nH]c(=O)cc4C(F)(F)F)c3)cc2)C(C)(C)C)cc1
C54H64F3N9O9S
1072.221000
CTQDFWAQIJZIMB-UOHLUGTHSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601533
Local ready
Direct docking supported
E3L062413
BDB062413
BDBM50601613
O=C1Nc2ccc(C(=O)N3CCCCC3)cc2/C1=C1/Nc2ccccc2/C1=N\O
C22H20N4O3
388.427000
VLFXWVIYYVBKIA-CULIEIDSSA-N O14965 Aurora kinase A
BindingDB
BindingDB:BDBM50601613
Local ready
Direct docking supported
E3L062414
BDB062414
BDBM50601615
CC(=O)O/N=C1/C(=C2/C(=O)Nc3c(Br)cccc32)Nc2ccccc21
C18H12BrN3O3
398.216000
GSXNABRCKCRBSO-YCCAXDBOSA-N O14965 Aurora kinase A
BindingDB
BindingDB:BDBM50601615
Local ready
Direct docking supported
E3L062415
BDB062415
isobutyryl-D-Lys(1)-Arg-Abu-D-Phg-(1)
CC[C@@H]1NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](NC(=O)C(C)C)CCCCNC(=O)[C@@H](c2ccccc2)NC1=O
C28H44N8O5
572.711000
PYARBFPEJRKODC-LNRXMEIDSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM50601691; PubChem:CID137630583
Local ready
Direct docking supported
E3L062416
BDB062416
BDBM50601692
Cc1c(F)c(N)cc(C(=O)Nc2cc(-c3ccc(C(=O)NCCCN)cc3)ccc2N2CCN(C)CC2)c1Cl
C29H34ClFN6O2
553.082000
OGLREAITVXTJOM-UHFFFAOYSA-N P61964, Q03164 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM50601692; PubChem:CID168269940
Local ready
Direct docking supported
E3L062417
BDB062417
BDBM50601693
Cc1c(F)c(N)cc(C(=O)N(C)c2cc(C(=O)Oc3ccccc3)ccc2N2CCN(C)CC2)c1Cl
C27H28ClFN4O3
510.997000
YVIIFQWVNDENNM-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM50601693; PubChem:CID168289079
Local ready
Direct docking supported
E3L062418
BDB062418
BDBM50601694
Cc1ncccc1-c1cc(Cn2ccn(C)c2=O)cc(C(=O)NCc2cc(Cl)cc(Cl)c2)c1
C25H22Cl2N4O2
481.383000
UAGMSQLTELEUSP-UHFFFAOYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM50601694; PubChem:CID168283338
Local ready
Direct docking supported
E3L062419
BDB062419
BDBM50601695
Cc1c(F)c(N)cc(C(=O)Nc2cc(-c3ccc(NC(=O)CCCCCNC(=O)CCCC[C@@H]4SC[C@@H]5NC(=O)N[C@@H]54)cc3)ccc2N2CCN(C)CC2)c1Cl
C41H52ClFN8O4S
807.437000
VPTAKNRDGAVVAF-WQLQHLIKSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM50601695
Local ready
Direct docking supported
E3L062420
BDB062420
BDBM50601767
O=c1[nH]c(CCCN2CCN(c3ccc(F)cc3F)CC2)nc2c(Cl)cccc12
C21H21ClF2N4O
418.875000
KYNSBOKWWDZNCG-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM50601767; PubChem:CID168281542
Local ready
Direct docking supported