E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L064881
BDB064881
BDBM50640370
CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)c1cc(Cc2n[nH]c(=O)c3ccccc23)ccc1F)B1O[C@@H]2C[C@@H]3C[C@@H](C3(C)C)[C@]2(C)O1
C37H48BFN4O5
658.624000
KQSQASCVGNZIRJ-BYKHCDSLSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB
BindingDB:BDBM50640370
Local ready
Direct docking supported
E3L064882
BDB064882
PD-1/PD-L1-IN-38
CC(=O)O[C@H]1Oc2c(C(C)C)cc3ccc4c(C)c(C)ccc4c3c2O[C@H]1c1ccccc1
C29H28O4
440.539000
XMHMVSQQAMERJL-WNJJXGMVSA-N P35869 Aryl hydrocarbon receptor
BindingDB, PubChem
BindingDB:BDBM50640693; PubChem:CID170453228
Local ready
Direct docking supported
E3L064883
BDB064883
(2R,3S)-PD-1/PD-L1-IN-38
CC(=O)O[C@@H]1Oc2c(C(C)C)cc3ccc4c(C)c(C)ccc4c3c2O[C@@H]1c1ccccc1
C29H28O4
440.539000
XMHMVSQQAMERJL-GGXMVOPNSA-N P35869 Aryl hydrocarbon receptor
BindingDB, PubChem
BindingDB:BDBM50640694; PubChem:CID170453230
Local ready
Direct docking supported
E3L064884
BDB064884
BDBM50640695
Cc1cccc2c1ccc1cc(C(C)C)c3c(c12)O[C@H](OC(=O)/C=C/c1ccc(O)c(O)c1)[C@H](c1ccc(O)c(O)c1)O3
C35H30O8
578.617000
PSHRTNAETFCBOD-WNPPLKHISA-N P35869 Aryl hydrocarbon receptor
BindingDB, PubChem
BindingDB:BDBM50640695; PubChem:CID177380849
Local ready
Direct docking supported
E3L064885
BDB064885
BDBM50640696
Cc1cccc2c1ccc1cc(C(C)C)c3c(c12)O[C@@H](OC(=O)/C=C/c1ccc(O)c(O)c1)[C@@H](c1ccc(O)c(O)c1)O3
C35H30O8
578.617000
PSHRTNAETFCBOD-MXVXFNSUSA-N P35869 Aryl hydrocarbon receptor
BindingDB, PubChem
BindingDB:BDBM50640696; PubChem:CID177380850
Local ready
Direct docking supported
E3L064886
BDB064886
BDBM50640697
Cc1cccc2c1ccc1cc(C(C)C)c3c(c12)O[C@H](c1ccc(O)c(O)c1)[C@H](OC(=O)/C=C/c1ccc(O)c(O)c1)O3
C35H30O8
578.617000
ODVJJEUIDBHHFB-MXVXFNSUSA-N P35869 Aryl hydrocarbon receptor
BindingDB, PubChem
BindingDB:BDBM50640697; PubChem:CID177380851
Local ready
Direct docking supported
E3L064887
BDB064887
BDBM50640698
Cc1cccc2c1ccc1cc(C(C)C)c3c(c12)O[C@@H](c1ccc(O)c(O)c1)[C@@H](OC(=O)/C=C/c1ccc(O)c(O)c1)O3
C35H30O8
578.617000
ODVJJEUIDBHHFB-WNPPLKHISA-N P35869 Aryl hydrocarbon receptor
BindingDB, PubChem
BindingDB:BDBM50640698; PubChem:CID177380852
Local ready
Direct docking supported
E3L064888
BDB064888
PROTAC BTK Degrader-6
Nc1ncnc2c1c(-c1ccc(Oc3ccccc3)cc1)nn2C1CCN(C(=O)CN2CCN(CC3CN(c4ccc5c(c4)C(=O)N(C4CCC(=O)NC4=O)C5=O)C3)CC2)CC1
C45H47N11O6
837.942000
SPGWKNITNYHIGX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM50640859; PubChem:CID168476120
Local ready
Direct docking supported
E3L064889
BDB064889
PROTAC BTK Degrader-9
Cc1cc(-c2nc(Nc3cnn(C4CCN(CC5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)c3)ncc2F)ccc1CNC(=O)c1cn(C(C)(C)C)nn1
C46H52FN13O5
886.006000
YJSLNCQHRATHFV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM50640860; PubChem:CID171037439
Local ready
Direct docking supported
E3L064890
BDB064890
BDBM50641309
COc1cccc2cc(-c3cc([C@H]4CC[C@H](C(=O)O)CC4)n4ncnc(N)c34)[nH]c12
C22H23N5O3
405.458000
LFGXKIVXIWOATF-JOCQHMNTSA-N Q9BVC4 Target of rapamycin complex subunit LST8
BindingDB
BindingDB:BDBM50641309
Local ready
Direct docking supported
E3L064891
BDB064891
BDBM50641972
COc1ccc2c(c1CC(=O)O)Oc1c(ccc(OC)c1CC(=O)N1[C@H](c3cc([N+](=O)[O-])cc(OC)c3OCC(=O)O)N(C)C(=O)[C@@H]1C)C2(C)C
C35H37N3O13
707.689000
PGHDTEOXCASCRK-UGAOPGRHSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB
BindingDB:BDBM50641972
Local ready
Direct docking supported
E3L064892
BDB064892
BDBM50641973
COc1ccc2c(c1CC(=O)O)Oc1c(ccc(OC)c1CC(=O)N1[C@@H](C)C(=O)N(C)[C@@H]1c1cc([N+](=O)[O-])cc(OC)c1OCC(=O)O)C2(C)C
C35H37N3O13
707.689000
PGHDTEOXCASCRK-GTOJURISSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB
BindingDB:BDBM50641973
Local ready
Direct docking supported
E3L064893
BDB064893
BDBM50641974
CCOC(=O)COc1c(OC)cc([N+](=O)[O-])cc1[C@@H]1N(C)C(=O)[C@H](C)N1C(=O)Cc1c(OC)ccc2c1Oc1c(ccc(OC)c1CC(=O)O)C2(C)C
C37H41N3O13
735.743000
FOMWYPGWNGTFQR-HSVJZKSBSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB
BindingDB:BDBM50641974
Local ready
Direct docking supported
E3L064894
BDB064894
BDBM50641975
COc1ccc2c(c1CC(=O)O)Oc1c(ccc(OC)c1CC(=O)N1[C@@H](C)C(=O)N[C@H]1c1cc([N+](=O)[O-])cc(OC)c1OCC(=O)O)C2(C)C
C34H35N3O13
693.662000
VXIRLGMYNOXUBK-MWOWJKGTSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM50641975; PubChem:CID177381692
Local ready
Direct docking supported
E3L064895
BDB064895
BDBM50641976
CCN1C(=O)[C@H](C)N(C(=O)Cc2c(OC)ccc3c2Oc2c(ccc(OC)c2CC(=O)O)C3(C)C)[C@@H]1c1cc([N+](=O)[O-])cc(OC)c1OCC(=O)O
C36H39N3O13
721.716000
GMLVOFPHFCRHAS-USXNREEHSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB
BindingDB:BDBM50641976
Local ready
Direct docking supported
E3L064896
BDB064896
BDBM50641977
COc1ccc2c(c1CC(=O)O)Oc1c(ccc(OC)c1CC(=O)N1CC(=O)N(C)[C@H]1c1cc([N+](=O)[O-])cc(OC)c1OCC(=O)O)C2(C)C
C34H35N3O13
693.662000
UIAYAWTZDVKNPA-MGBGTMOVSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM50641977; PubChem:CID177381694
Local ready
Direct docking supported
E3L064897
BDB064897
BDBM50641978
CC[C@H]1C(=O)N(C)[C@@H](c2cc([N+](=O)[O-])cc(OC)c2OCC(=O)O)N1C(=O)Cc1c(OC)ccc2c1Oc1c(ccc(OC)c1CC(=O)O)C2(C)C
C36H39N3O13
721.716000
LFPHYTDIVOOSTI-YUYWZBKDSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB
BindingDB:BDBM50641978
Local ready
Direct docking supported
E3L064898
BDB064898
BDBM50641979
CCOc1c(OC)cc([N+](=O)[O-])cc1[C@@H]1N(C)C(=O)[C@H](C)N1C(=O)Cc1c(OC)ccc2c1Oc1c(ccc(OC)c1CC(=O)O)C2(C)C
C35H39N3O11
677.707000
HFSVXODZAAUHDB-RTHCMUBDSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM50641979; PubChem:CID177381696
Local ready
Direct docking supported
E3L064899
BDB064899
BDBM50641980
CCOc1c(OC)cc([N+](=O)[O-])cc1[C@@H]1N(C)C(=O)[C@H](C)N1C(=O)Cc1c(OC)ccc2c1Oc1c(ccc(OC)c1CC(N)=O)C2(C)C
C35H40N4O10
676.723000
ZJJAWOVMHSOAKQ-RTHCMUBDSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM50641980; PubChem:CID177381697
Local ready
Direct docking supported
E3L064900
BDB064900
BDBM50641981
CCOc1c(OC)cc([N+](=O)[O-])cc1[C@@H]1N(C)C(=O)[C@H](C)N1C(=O)Cc1c(OC)ccc2c1Oc1c(ccc(OC)c1CC#N)C2(C)C
C35H38N4O9
658.708000
BXZXOKFIFNVNBL-DUTUXMCTSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM50641981; PubChem:CID177381698
Local ready
Direct docking supported