E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L008081
BDB008081
BDBM192235
CCOC(=O)c1[nH]c2cc(Cl)ccc2c1C(N[C@H](CC(C)C)C(=O)NCCO)C(=O)NCc1ccccc1
C28H35ClN4O5
543.064000
YSLXSHNOVDKRBA-LETIRJCYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192235; PubChem:CID56941382
Local ready
Direct docking supported
E3L008082
BDB008082
BDBM192236
CC(C)CC(NC(C(=O)NCc1ccccc1)c1c(C(=O)O)[nH]c2cc(Cl)ccc12)C(=O)NCCO
C26H31ClN4O5
515.010000
HQYGMJJJRLYSAC-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192236; PubChem:CID56941530
Local ready
Direct docking supported
E3L008083
BDB008083
BDBM192237
CCOC(=O)c1[nH]c2cc(Cl)ccc2c1C(N[C@H](CC(C)C)C(=O)NCCCN1CCOCC1)C(=O)NCc1ccccc1
C33H44ClN5O5
626.198000
YGHPSLPKTNEEMH-SCBLGKRXSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192237; PubChem:CID56941383
Local ready
Direct docking supported
E3L008084
BDB008084
BDBM192238
CC(C)CC(NC(C(=O)NCc1ccccc1)c1c(C(=O)O)[nH]c2cc(Cl)ccc12)C(=O)NCCCN1CCOCC1
C31H40ClN5O5
598.144000
BXMBQDSQLPJRKK-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192238; PubChem:CID56941531
Local ready
Direct docking supported
E3L008085
BDB008085
BDBM192239
CC(C)CC(NC(C(=O)NCc1ccccc1)c1c(C(=O)NO)[nH]c2cc(Cl)ccc12)C(=O)NO
C24H28ClN5O5
501.971000
VRQFWSWBTGHUMK-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192239; PubChem:CID56941384
Local ready
Direct docking supported
E3L008086
BDB008086
BDBM192240
CC(C)CC(NC(C(=O)NCc1ccccc1)c1c(C(=O)O)[nH]c2cc(Cl)ccc12)C(=O)NCCN1CCOCC1
C30H38ClN5O5
584.117000
CZXLKXIBENLKBB-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192240; PubChem:CID56941532
Local ready
Direct docking supported
E3L008087
BDB008087
BDBM192241
CCOC(=O)c1[nH]c2cc(Cl)ccc2c1C(C(=O)NC(C)(C)C)N(C=O)Cc1ccccc1
C25H28ClN3O4
469.969000
LQMQDLYPMZBDEL-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192241; PubChem:CID121596252
Local ready
Direct docking supported
E3L008088
BDB008088
BDBM192242
CCOC(=O)c1[nH]c2cc(Cl)ccc2c1C(NCc1ccccc1)C(=O)NC1CCCCC1
C26H30ClN3O3
467.997000
RLBMFFMCMZEVKG-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192242; PubChem:CID56942533
Local ready
Direct docking supported
E3L008089
BDB008089
BDBM192243
O=C(O)c1[nH]c2cc(Cl)ccc2c1C(NCc1ccccc1)C(=O)NC1CCCCC1
C24H26ClN3O3
439.943000
XDUGSDDMLYOUOG-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192243; PubChem:CID56942534
Local ready
Direct docking supported
E3L008090
BDB008090
BDBM192244
CC(C)(C)NC(=O)C(NCc1ccc(Cl)cc1)c1c(C(=O)O)[nH]c2cc(Cl)ccc12
C22H23Cl2N3O3
448.350000
DDXQPBIVXUVPLH-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192244; PubChem:CID56941080
Local ready
Direct docking supported
E3L008091
BDB008091
BDBM192245
CC(=O)N(Cc1ccccc1)C(C(=O)NC1CCCCC1)c1c(C(=O)NCCc2ccncc2)[nH]c2cc(Cl)ccc12
C33H36ClN5O3
586.136000
NUDOFPZNMCFUGO-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192245; PubChem:CID56941081
Local ready
Direct docking supported
E3L008092
BDB008092
BDBM192246
COCCNC(=O)c1[nH]c2cc(Cl)ccc2c1C(C(=O)NC1CCCCC1)N(Cc1ccccc1)C(C)=O
C29H35ClN4O4
539.076000
AVSQQXFFLKCQAA-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM192246; PubChem:CID56941236
Local ready
Direct docking supported
E3L008093
BDB008093
BDBM193080
C[C@@H]1Cc2c([nH]c3ccccc23)[C@@H](c2cnc(N3CCC(N4CCN(c5ccc(NC6CCC(=O)NC6=O)cc5F)CC4)CC3)nc2)N1CC(F)F
C38H44F3N9O2
715.825000
VKXBICAYRASHLV-SDYXXRSESA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM193080
Local ready
Direct docking supported
E3L008094
BDB008094
BDBM193082
C[C@@H]1Cc2c([nH]c3ccccc23)[C@@H](c2cnc(N3CCC(N4CCN(c5ccc(NC6CCC(=O)NC6=O)cc5F)CC4)CC3)nc2)N1CC(C)(C)F
C40H49F2N9O2
725.889000
ZTWCGKQCSGYWQV-COGRHDQJSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM193082
Local ready
Direct docking supported
E3L008095
BDB008095
BDBM193083
C[C@@H]1Cc2c([nH]c3ccccc23)[C@@H](c2cnc(N3CCC(N4CCC(c5ccc(NC6CCC(=O)NC6=O)cc5F)CC4)CC3)nc2)N1CC(F)F
C39H45F3N8O2
714.837000
MHLAGDGKSQVFQO-UXLHZAISSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM193083
Local ready
Direct docking supported
E3L008096
BDB008096
BDBM193084
C[C@@H]1Cc2c([nH]c3ccccc23)[C@@H](c2cnc(N3C[C@@H]4[C@@H](CN5CCN6c7cc8c(cc7OC[C@@H]6C5)C(=O)N(C5CCC(=O)NC5=O)C8)[C@@H]4C3)nc2)N1CC(F)F
C42H45F2N9O4
777.877000
XWLHEKLYOZIHSW-BDYXAUMISA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM193084
Local ready
Direct docking supported
E3L008097
BDB008097
BDBM193085
C[C@@H]1Cc2c([nH]c3ccccc23)[C@@H](c2cnc(N3CCC(CN4CCN5c6ccc7c(c6OC[C@@H]5C4)CN(C4CCC(=O)NC4=O)C7=O)CC3)nc2)N1CC(F)F
C42H47F2N9O4
779.893000
HIPYCPSIFQICFX-ZELNDKNYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM193085
Local ready
Direct docking supported
E3L008098
BDB008098
BDBM195608
CC(C)c1c(-c2ccccc2)[nH]c2c(C#N)cnn2c1=O
C16H14N4O
278.315000
DHXKRMSKXLDZGY-UHFFFAOYSA-N P29375, P41229, Q8NHM5, Q9BY66 Lysine-specific demethylase 5C, Lysine-specific demethylase 2B, Lysine-specific demethylase 5A, Lysine-specific demethylase 5D
BindingDB
BindingDB:BDBM195608
Local ready
Direct docking supported
E3L008099
BDB008099
BDBM195609
CCc1c(-c2ccccc2C)[nH]c2c(C#N)cnn2c1=O
C16H14N4O
278.315000
OXELDRCVUWWSFZ-UHFFFAOYSA-N P29375, P41229, Q8NHM5 Lysine-specific demethylase 5A, Lysine-specific demethylase 5C, Lysine-specific demethylase 2B
BindingDB
BindingDB:BDBM195609
Local ready
Direct docking supported
E3L008100
BDB008100
BDBM195610
CCc1c(C)[nH]c2c(C#N)cnn2c1=O
C10H10N4O
202.217000
AEGZTINJBDVGEP-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB
BindingDB:BDBM195610
Local ready
Direct docking supported